| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3454 |
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| Symbol | |
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| ID | 4254020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4129221 |
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| End bp | 4131362 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638120092 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_735577 |
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| Protein GI | 113971784 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGACA ATAAGATGGC TGCAAACGCT TCAACTATCC CCCACGGCTT TAAATGCTCT
GCAATCGCCA GCGCGCTGAC CTTAGCATTA GGCGCTTCGG TTGCCTCACA GGCCATGGCC
GACGAGACAA ATCAGACTCA AATTGAACGT ATTCAAGTCC ATGGCGAACA GAGTATTGGC
CGTAATGCCT TAGGCTCGGC TGATGCTTTG CTAAAAGACC AAGGCGTCGA TTTCTCCGAA
GCGGGCGGCG TTTCCGCCTT GCCCGTACTC AATGGCATGA TGGGCGATCG CATTAAAGTA
TTAGTCGATG GCGCGGATAT CACCGCCTCC TGTGCCAACC AAATGAACCC ACCACTCTCC
TACGTTTCCG CTAATCAAAT CAGCTCGGTA GAAGTGGTCG CGGGCGTGTC CCCTGTCAGT
GCGGGCGGCG ACAATATCGC CGGGGTGATT AAGGTTAATA GCCTGAATCC TAAATTTAGC
GACAGCGAAG ACCTCAGCTT CGAAAGCGGC GAGATTTCAT CGGGATACCG CAGCACCAGC
GATGCCTTCT TACTCGGTGC TAAGGCTGGA ATCGCCAGTA AGAACTTAAG TTTCAGCTAT
CAAGGCGCCT ATGAAGATGC CAATAGCTAC CACGATGGTC ACGGCGATAA AGTGCTCGAT
ACCCTCTATC GCGCCCAAAA CCATGCCTTA ACAGCGGCAT GGCGCGATGA CACACAACAA
CTGGCGATTA AGCTAACGCA TCAGGCGATC CCGTTCCAAG GTTTCCCGAA CCAATACATG
GATATGACGG ATAACAAGAG TTATGGCGCC CTAGTCCGTT ATCTGCGGGA TTTAGACAAC
GACGGCGAAT TTAGCGCCCA GTTAAACTGG CACAGTGTGA AGCATGAAAT GGGCTTCTTC
ACTCCGGAAA AAACCGGCAA GATGCCGATG AACACTGAGG GCAGCGATTA CAGCTACCAA
CTGCATTGGC GCTTACCTAT CGGCGATGAC AGCACGTTAC TCGTCGGTCA GGAATTTTAT
AACTATCAAC TCGATGATAC TTGGCCAGCC GTGCCCGGCA CTATGATGGC ACCCAATGAC
TATATCAATA TCAACGATGG TGAACGCCGC CGCGCCGCAG TTTATGGCGA GTGGCAGCAA
AACCTCACGC CACTCTGGTG GTTATCTGCC GGGGTGCGTT ATGAATATGC CACCACAGAT
ACGGGCGAAG TGCAGGCCTA CAGCAATATG CCTATGATGG GCATGCCAAA TATGGATGCC
GAAGCGGCAA AAGCCTTTAA TGCTATGGAT AGAAGCCGAG ACGATAACCT TATCGATGCT
ACGCTGTTGG CGCGTTATCA GCTATCGGCC AAGCAACAAT TGGAATTTGG CTTAGCCCGT
AAAAACCGCG CGCCAAACCT GTATGAGCGT TACAGCTGGG GCCGTGGCGT GATGGCAACG
ACAATGATCG GCTGGTATGG CGACGGTAAC GGTTACGTGG GCAATCCCGA TCTTAAGCCT
GAAACCGCCC ACACCCTGAG CGCGGCCTAC AAGTTTGCGG GCGATGAATG GCAATTCTCG
ACCACGGCTT GGTATAGCGC AGTCACAGAC TATATTGATG CCGAGGTGAT TGGCAGCTTT
AACCGTACTG GCCTTGCCAG CGGTAAACGC AATATCCTTA AATTCACCAA CGAAGATGCC
CATCTATATG GCGCTAAGTT GAGTGCGAAC TACCTATTAG CCGATACCGA CAGCGGTAAA
TGGCAGATGC AGGGCAAGCT GAATATCACC CGTGGCGAGC GCGATGAGGG TAACGAGCCG
CTTTATCAAA TCAAACCGCT ACAAACCGAG TTAGCCCTTA GCCATCAACT GGGTGATTGG
GAAAACCGCC TGTCATGGCA ATGGGTAGCG ACTAAGGATA AGGTCGATGA TCGCCGCTTA
GAAAATGAGA CCGACAGCTA TTCGCTGCTA AATCTAAGCA GCAGTATCAA ATGGCAAGAG
CTGAGTTTAA CCTTTGCGAT CAACAACCTG TTTGATACTT ACTACGAACT GCCACTGGGT
GGTGTCAACC TTGCCGAATT TAAGGCCGAT AGCAGTGGTG GCTTTAGCCA ATTCGCAGGC
TCGGGTCGCT CATTTGAATT AGGCGCTAGC TATCGCTTCT AA
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| Protein sequence | MEDNKMAANA STIPHGFKCS AIASALTLAL GASVASQAMA DETNQTQIER IQVHGEQSIG
RNALGSADAL LKDQGVDFSE AGGVSALPVL NGMMGDRIKV LVDGADITAS CANQMNPPLS
YVSANQISSV EVVAGVSPVS AGGDNIAGVI KVNSLNPKFS DSEDLSFESG EISSGYRSTS
DAFLLGAKAG IASKNLSFSY QGAYEDANSY HDGHGDKVLD TLYRAQNHAL TAAWRDDTQQ
LAIKLTHQAI PFQGFPNQYM DMTDNKSYGA LVRYLRDLDN DGEFSAQLNW HSVKHEMGFF
TPEKTGKMPM NTEGSDYSYQ LHWRLPIGDD STLLVGQEFY NYQLDDTWPA VPGTMMAPND
YININDGERR RAAVYGEWQQ NLTPLWWLSA GVRYEYATTD TGEVQAYSNM PMMGMPNMDA
EAAKAFNAMD RSRDDNLIDA TLLARYQLSA KQQLEFGLAR KNRAPNLYER YSWGRGVMAT
TMIGWYGDGN GYVGNPDLKP ETAHTLSAAY KFAGDEWQFS TTAWYSAVTD YIDAEVIGSF
NRTGLASGKR NILKFTNEDA HLYGAKLSAN YLLADTDSGK WQMQGKLNIT RGERDEGNEP
LYQIKPLQTE LALSHQLGDW ENRLSWQWVA TKDKVDDRRL ENETDSYSLL NLSSSIKWQE
LSLTFAINNL FDTYYELPLG GVNLAEFKAD SSGGFSQFAG SGRSFELGAS YRF
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