Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2956 |
Symbol | lspA |
ID | 4253527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3530069 |
End bp | 3530581 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638119592 |
Product | lipoprotein signal peptidase |
Protein accession | YP_735084 |
Protein GI | 113971291 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0597] Lipoprotein signal peptidase |
TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0330316 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.232232 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCATTAA CTTGGAAAGA CAGTGGCTTA CGTTGGTATT GGGTAGTTGT ATTGGTGTTT TTGGCCGATC AACTATCCAA ACAATGGGTC TTAGCCAATT TTGATTTGTT CGAATCGGTG AAGTTATTAC CTTTTTTTAA TTTCACCTAT GTACGTAACT ATGGCGCCGC ATTTAGCTTT TTAAGTGAAG CAGGCGGTTG GCAACGTTGG TTATTTACCT TAGTGGCTGT TGGTTTCAGT ACCTTGTTGA CTGTGTGGCT GCGCAAGCAA TCGGCATCCC TCTGGAAGTT AAACTTGGCT TACACCTTAG TGATTGGTGG CGCCCTAGGT AACTTAATCG ATCGATTGAT GCACGGTTTT GTGGTGGATT TTATCGATTT TTATTGGGGT AAGAGCCATT ATCCCGCCTT TAATATCGCC GATTCCGCGA TTTTTATCGG CGCAGTGCTG ATCATTTGGG ATTCGTTTTT TAACAGCAAA TCCGAACAAG ATAAAACCGA AGAGGTGAAG TAG
|
Protein sequence | MPLTWKDSGL RWYWVVVLVF LADQLSKQWV LANFDLFESV KLLPFFNFTY VRNYGAAFSF LSEAGGWQRW LFTLVAVGFS TLLTVWLRKQ SASLWKLNLA YTLVIGGALG NLIDRLMHGF VVDFIDFYWG KSHYPAFNIA DSAIFIGAVL IIWDSFFNSK SEQDKTEEVK
|
| |