Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2950 |
Symbol | |
ID | 4253521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3522891 |
End bp | 3526424 |
Gene Length | 3534 bp |
Protein Length | 1177 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638119586 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | YP_735078 |
Protein GI | 113971285 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.103323 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.178047 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAAAA AAATATTGTG TGCCCTGAGT GTTACTTTTG TGGTCATTGC AGGGCAAATC CATGCAGACG ATACCGAGCT ATATCTAGTC GACTCGAGTG TGAAAACTGG CAAGCGTCCG CAGATACTCA TTATCTTTGA TAACTCAGGC AGTATGTCAA CTGAAGATAC TAATGTTGTC AGTTCCTATT GCTCAGCAGC TGACCAAGCT GCGAGTAACT GTACTTATCC AGATGGGTTT GCTACCTATT TAGAGGGTTA TTCAGGCTAT ATCAGTCAAA AAGGGATTTA TTGGAATGCC GGGGGAATTG ATAATACGAG TAACGCCCCA ACACCAGATT CACCTAATGA TTCCCGTCGT TTTTATGCCG ATAACAATAA CTGTAATAAG GCCAAAATCG CCCTAGAGTC ACGGGGGCGT TACACTGGGT TGTTAAGGGA GTTTAAGGCG AGTGGCCAAA GCGGCAAATG GACGGCATTG GCTGAAAACG AAGGTTTTAA CCAGGGGCAA ATTGTTGATT GCTATCAAGA TATTATTGAG GGTGATCCCA TAAACCCCGG TAGGTATAAA CAGGGAAATA CTTACAATAA CTTTGCCGAT GGATATCCCA TTGATGCAAA AGCAATGTAT ACCACAGCCA CCGATAGTGA CGCTCAAAAA GATAGTTTAG ATAAAACGGA TTTTGGTAAG GGATCGCCAG TTACTTTATA TACCGCGCAT TATTTGGTTT GGTATAAGTG GGTGACTACG ACTACCGAGG GACAAAATAG CGGCGGAACA GGCTCTAGAC TTGATGTGGC TAAAGCCGCA ATTGACTCGG CCTTAACAGA TTTAAACATA GACATTGACG CTGGTCTGGC GGTCTTTAAC CTCAACTACG CCGCTGAAGG GGATGCTGAT GGTGGTCGCA TCGTATCGTC CATTAAGCAA TTAACCAGCG CGAATCAAAC ATCGCTGATG TCCTTGATTA ATGGTATGCC CGCACAAACT AATACCCCAC TATGTGAAAC ATTATATGAA GCCCATCAAT ATTTTAGTGG TGGTGATGTG ACTTTTGGCA ATAAGGATGC TAATGCGAAA GGAAACGATA AAATTGATGG ATATGTGCCT AATAGTCCGC CAAGCATCTT ATCTACAGGT AAATACACTA CGCCATTTAA AAAATGTCCC GATACGGCTT ATATCATCTA CATTACCGAC GGTGCACCAA CATTAGATCA TTCGGCCGAT GCTAAAGTAC TCGATTTGAC AGGCAAAGCT GAAGTGGCTG CGGATTACTC TGGATTTGAG TTTACAAATG ATAAAGGTGA AAAAGAAAAC AGCTATCTTC CTGCTTTAGC CGCCTATATG GCAAATAATG ACCTAGTTAA AGGTGTTACA GACGCTACTG GAATTGATAA CAAGCAGAAT GTGCGTACTT TTACCATAGG TTTCACTGAT GGTGCTGACG TTGCAGCAAA ATTGCTGGAA GAAACCGCTT TTAGGGGGGG GAATCCACGA GAACTTAAAA ATGGGAATTT GGTCTCTAAA GGCTACTATA GAGCCGCAAC AGGATTGGAT TTGATTCAAG CTTTGGATGA CGCATTAAAG TCAATTTTAT CAATCGACTC TTCCTTCACT TCTCCAAGCA TTGCCAGTAA TAATTTTGAT AAAACCCAAA CCTATAACTC GGCTTATTTT GCGATGTTTT TACCTGGAGA AGGCCCTCGC TGGAGCGGCA ATTTAAAAAA ATTGAAAGTG AATTCAGCGG GTGAAATTGT TGGCCCAGGT GGTGACACAA ATGCAATTGA TAGCAATGGT AATATCTCTG CTTCAACTTG CACTTATTGG AATGTTTGTG CCGCTGGTTC GCCAGATGGA AATAAAGTTA ATTCGGGCGG AGTGTTACCT ATATTAAGAG AATCCCTTAA GGATCGTAAG CTTAAATCAT TGAGTGGCAG TAATATTGTT AATATTACTG CTACAAGTTT TGTTAGTGAT TATTCACAAG CCGATCTTGA TTGGTTATAC GGTGTCGACG TTGATGATGA TAACAATAGT GGCAGCAATA CGGATGCTAG AGAAGATATT ATGGGCGATC CGCTTCATTC TAAGCCGCTA GCGATTAACT TTGGTAAAAA AGGTGCTGAT TTAGATGTGC GAGTATTGGT TGGCACTAAC CAAGGCTTAG TGCACATGTT TAAGGATTCC GATACCGGCA GCAATGATTT CAATATTGGT AGCGTTAAAG AGTCATGGGC ATTTATCCCT CCTGAATTAT GGGGAAATGT CCCTAAATTA AGGCAAAATC CACCTATAGG TGAACATAGT GTTTATGGTA TGGATTTGTC ACCCGTGGCA TATACTGAGA CCAATGAAAA TGGTGAAGTT AATAAAGCAT GGGTGTTTTT AGGTATGCGT CGAGGTGGAA GTTCATATTA TGCCCTCGAT ATCACCACTC CAGATTCGCC AATCTTTAAG TGGAAAATTG ATTCATCTAC CAGTGGTCTC GCAAAGCTTG GCCAATCTTG GTCTGAACCT TTAGTGACAT TCATTCCAGG TCACGAAACG CCTGTGTTGA TATTCGGTGG GGGGTTAGCT TCGGCTACCG GAAGTGGTGA AGCCATTTAT ATTGTTGATG CAAATAAGGG GACTTTTATC CATAGTTTCA CTGCCGATGG AATGAACAGT GTGCCGAATA AGGTTGCTGT GTTAGATAGC AATAATGATG GTTACACTGA CCGTATTTAT GCCACTGATA TTGCTGGTAA TGTATGGCGT ATGGATTTAC CAACAGATGA AGAATCTAAA TGGAGCATAT TTAAATTTGC CTCTATTAGT GGTATTGCAC CCGATAATCG AATGTTTTTC GCTGAGCCAA CAGTCGCCCA GACTCAATTT AATAATATAC ATTCCGAGAA TGGTGTGGAG TCTTATCAAA GTATTCCATA TGATGCGGTC GCGGTGGGAA CAGGCAATAG AACTAACCCA CTAGATATCA AAACGAATGA TATGTTTTAT GTGTTCCAAG ATAGAAACGT GGTAACTAAG CAGTATGTGG GTGCAGATGT TCCTGCTCCA TTGAATATTA CAAATTTATA CAATGTCACC TCTGCTGCTC CCGTAAGCCA GGATGAAAAT ATTGCATTTG GTGAGAAAAG AGGTTGGTAT TATGACTTTC CATCGACAGG TGAGAAGAGT CTTTCTGCCT CATTGATTTT TAATGGAAAA GTGTACTTTA CATCGTTTGT TCCTCCAACG AAACAAGACG TTGATCTTGA TGCAGGTATT TGTGGTTTCT CCGGCCAAGG CCGATTGTAT GTGTTTGATT TACATAGAGG TACTAGGACA TCTAACACTC TGTATTATGA AGTTGGTGAG CGCGTTCCTG ACACCCCACA AATTGTTATT CCTGAACCAG AAAAAGGAAA AGAACCTGAA GCCTACGTGA TTGGTGTTGG TAAAGGTGAG TGCGAAAACG GCGCGTGTAA AGGTACCATT AAGTTAGGTA GTGGTTTAAA AACTAACAAA ATTTATTATC ATATTGATGA GTAA
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Protein sequence | MFKKILCALS VTFVVIAGQI HADDTELYLV DSSVKTGKRP QILIIFDNSG SMSTEDTNVV SSYCSAADQA ASNCTYPDGF ATYLEGYSGY ISQKGIYWNA GGIDNTSNAP TPDSPNDSRR FYADNNNCNK AKIALESRGR YTGLLREFKA SGQSGKWTAL AENEGFNQGQ IVDCYQDIIE GDPINPGRYK QGNTYNNFAD GYPIDAKAMY TTATDSDAQK DSLDKTDFGK GSPVTLYTAH YLVWYKWVTT TTEGQNSGGT GSRLDVAKAA IDSALTDLNI DIDAGLAVFN LNYAAEGDAD GGRIVSSIKQ LTSANQTSLM SLINGMPAQT NTPLCETLYE AHQYFSGGDV TFGNKDANAK GNDKIDGYVP NSPPSILSTG KYTTPFKKCP DTAYIIYITD GAPTLDHSAD AKVLDLTGKA EVAADYSGFE FTNDKGEKEN SYLPALAAYM ANNDLVKGVT DATGIDNKQN VRTFTIGFTD GADVAAKLLE ETAFRGGNPR ELKNGNLVSK GYYRAATGLD LIQALDDALK SILSIDSSFT SPSIASNNFD KTQTYNSAYF AMFLPGEGPR WSGNLKKLKV NSAGEIVGPG GDTNAIDSNG NISASTCTYW NVCAAGSPDG NKVNSGGVLP ILRESLKDRK LKSLSGSNIV NITATSFVSD YSQADLDWLY GVDVDDDNNS GSNTDAREDI MGDPLHSKPL AINFGKKGAD LDVRVLVGTN QGLVHMFKDS DTGSNDFNIG SVKESWAFIP PELWGNVPKL RQNPPIGEHS VYGMDLSPVA YTETNENGEV NKAWVFLGMR RGGSSYYALD ITTPDSPIFK WKIDSSTSGL AKLGQSWSEP LVTFIPGHET PVLIFGGGLA SATGSGEAIY IVDANKGTFI HSFTADGMNS VPNKVAVLDS NNDGYTDRIY ATDIAGNVWR MDLPTDEESK WSIFKFASIS GIAPDNRMFF AEPTVAQTQF NNIHSENGVE SYQSIPYDAV AVGTGNRTNP LDIKTNDMFY VFQDRNVVTK QYVGADVPAP LNITNLYNVT SAAPVSQDEN IAFGEKRGWY YDFPSTGEKS LSASLIFNGK VYFTSFVPPT KQDVDLDAGI CGFSGQGRLY VFDLHRGTRT SNTLYYEVGE RVPDTPQIVI PEPEKGKEPE AYVIGVGKGE CENGACKGTI KLGSGLKTNK IYYHIDE
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