Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2681 |
Symbol | |
ID | 4253252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3198316 |
End bp | 3199359 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638119316 |
Product | porin |
Protein accession | YP_734809 |
Protein GI | 113971016 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.201946 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.861695 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAG TAATCTTAAC CGCTTCAGTA TTTGCCATTT CCGCCTTACC CGTGTTGGCC GATGAGTCAC CCTCTGTGTA TGGCCGACTG GATTTATCCG TTACCCATTC CGAATTAAGT TCCACCGTTT ATAGCGGTAC CAGCGGCGTT AAGGTGGGCG AGAGCGGGAC TTATCTTGAA AACAACTCAT CTAATATTGG GGTTAAAGGT AAATCAGCTA TCAGTGATGG CATTAATGTC GTCTACAAGA TGGAGTTTGG CGTAAACAAT ACCTCTAATC GGGCGAATGA CTCCAGTAAA GTATTCTCGG CGAGAAATAC TTATCTGGGC GTAGAAACGG CCTACGGCAC CTTGCTTGTC GGTCGAAATG ATACGGTTTT CAAAACCGCC GAAGGTAAAG TCGATATTTT TGGTACGACC AATGCGGATA TTAATCAATT AGTCTCTGGT CAGACGCGTA GTGCCGATGG TGTTTGGTAT TACTCGCCTA AGTTATTCGG CCTGATGGAT ATCAACGCGA CTTATTTATT ACAGGATAAC TATGGGGCTG ATAATGAGTT GTATGCCTTA AGTACCACGC TGGGTGATAA AGACCTTAAA AAGAACCCTT ATTATTTTGC TGCCGCCATT AATAAAGGGA TCGCCAATAT CGATGCCTAT CGTTTTGTGA CCCAAGTTAA GCTGGGTGAC ATGAAGCTGG GTGGGATTTT CCAACATACC GAAAGTTTAA AATTTTCCAA TATGGAAGGT GACTCCTATT TTATTAACGC AACCTATGAC CTATGGGGAG CGACATTAAA AGCGGAGTAC GGTCAGGATA GTTCGGGTTT GGGTGGCTAT TTCTCTAAAC TCGTTGGCCC AAATGAGCAA ATAACGGACG TGGATATCAG TCAATTTACC CTTGGCGCGG ATAAGAAACT GACCAAATCG ACCCGCGTTT ATACCCATTT TTCTATGTAT GAAGGCGAGT ATCAAATGTC TGGCATAACC CAAGACATTG GCGACGATAA GGTTATTACT GTCGGTGTTC GCTACGTTTT TTAA
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Protein sequence | MKKVILTASV FAISALPVLA DESPSVYGRL DLSVTHSELS STVYSGTSGV KVGESGTYLE NNSSNIGVKG KSAISDGINV VYKMEFGVNN TSNRANDSSK VFSARNTYLG VETAYGTLLV GRNDTVFKTA EGKVDIFGTT NADINQLVSG QTRSADGVWY YSPKLFGLMD INATYLLQDN YGADNELYAL STTLGDKDLK KNPYYFAAAI NKGIANIDAY RFVTQVKLGD MKLGGIFQHT ESLKFSNMEG DSYFINATYD LWGATLKAEY GQDSSGLGGY FSKLVGPNEQ ITDVDISQFT LGADKKLTKS TRVYTHFSMY EGEYQMSGIT QDIGDDKVIT VGVRYVF
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