Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2674 |
Symbol | |
ID | 4253245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3192357 |
End bp | 3193766 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638119309 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_734802 |
Protein GI | 113971009 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCGAC CAACGCTTTT CTATCATCTA CAGGACGTCG AGACCGAGCA GGCATTAGTG CAGCTCGAGG GCGCGCAGAC CTACAACAAG CTACGCAGTA CCGATGATTT ATCTTGGATT AGTCAGCTGG AGGCCAATCG TATCGATGTG GCGATCATTG AGCTGCCCCG TCTAAGCCGT GAGGATTACT TAGCCTTACT CGAGTCCAGC GCCATTGCGG ATGTGGAGTT TATTTTCCTC TCCGATGGCC TACCGAATCC TCATCTCGAT AAACTCTTAT CCAAATACGC GGGCTACCAT TTCCGTAAGC CCATCGATAT GTCGTTGCTG TGCGAAACCT TAGCGGATTT TGCCCAGCAT CTGGTTGCCA ACACTTCGAC GCGCATTCGC CCCTTTGCTA GCGAATTAGA CCAATATGGT CTGCTGGTGG GTTCCTCGTT ACCTATGCAC CGTTTGTATC GCACTATCCG CCGCGTGTCG GCCGCCGAGA GCAATGTGTT GATTATCGGC GAGAGTGGCG CAGGTAAAGA ACTGGTCGCC AATACCATTC ACTTAGCCAG CCCGCGGGTG AATAAGCCTT ATATTGCGAT TAACTGCGGC GCCTTGAGCC CAGAATTGGT CGATAGTGAA CTCTTCGGCC ATGTAAAAGG CTCTTTCACT GGTGCGAATC GTGATCATCA AGGGGTATTT GAGCAGGCCG AAGGCGGCAC CTTATTCCTC GATGAAGTCA CCGAAATGCC CCTAGAGCAT CAAGTTAAGC TATTAAGAGT GCTTGAAAAT AATGAATATC GTCCCGTCGG TAGCCCTAAG GTGCTCAAGG CCAATGTGCG TATTGTGGCG GCGACAAACC GCGATCCTTT AGTGGCGATA GAGCAAGGAC AATTGCGGGA AGATTTGTAC TTTCGCTTAG CGCATTTCCC CATTCAAGTG CCGCCATTGC GGGAGCGCGG GGAAGATATA GTGGGACTTT CGAAGCATTT TCTGGCCTAT CGCAATGCGG CGGAAAAACA GAGCAAAGCG TTCTCGCCCT CAAGTTTAGA GGCGATTGCG GCCCACACTT GGCCTGGGAA TGTGCGCGAG TTAAAGCATG CTATTGAGCG CGCTTATATT CTGGCGGACC ATGAGATTAC CCCTGAGCAT TTACAGCTTA CGCCCAGTTT GGAAAAAGAG ACGACTGCGG AGGAAAATGT AGTGATCCCC CAAGGTATGC GCCTTGAGGA GCTAGAAAAA ATCGCCATTT ACCAAGCGCT TGAAACGAGT CTGGGCAATA AGACCGACAC CGCCGAGCAG CTTGGGATCA GCGTTAAAAC CCTCTATAAC AAGCTCAGTA AATATGAGCA GGAGTCAGAC GTTCAAACCG TTGTTGATGC CGTTAGCGAA GATTCCGTTA GCAATAGCGT CGCCAAGTAG
|
Protein sequence | MIRPTLFYHL QDVETEQALV QLEGAQTYNK LRSTDDLSWI SQLEANRIDV AIIELPRLSR EDYLALLESS AIADVEFIFL SDGLPNPHLD KLLSKYAGYH FRKPIDMSLL CETLADFAQH LVANTSTRIR PFASELDQYG LLVGSSLPMH RLYRTIRRVS AAESNVLIIG ESGAGKELVA NTIHLASPRV NKPYIAINCG ALSPELVDSE LFGHVKGSFT GANRDHQGVF EQAEGGTLFL DEVTEMPLEH QVKLLRVLEN NEYRPVGSPK VLKANVRIVA ATNRDPLVAI EQGQLREDLY FRLAHFPIQV PPLRERGEDI VGLSKHFLAY RNAAEKQSKA FSPSSLEAIA AHTWPGNVRE LKHAIERAYI LADHEITPEH LQLTPSLEKE TTAEENVVIP QGMRLEELEK IAIYQALETS LGNKTDTAEQ LGISVKTLYN KLSKYEQESD VQTVVDAVSE DSVSNSVAK
|
| |