Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2508 |
Symbol | |
ID | 4253079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2981959 |
End bp | 2983878 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638119143 |
Product | decaheme cytochrome c MtrF |
Protein accession | YP_734636 |
Protein GI | 113970843 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00292179 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000509076 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAACAAGT TTGCAAGATT TAGCACACAA CTCAGTCTGT TGCTGGCCTT AACCACCCTT CTGACCGCCT GCGGTGGTAG CGATGGTAAC GATGGCGATC CTGGCGAGCC TGGTAAACCA CCGGCGATGA CGATCACTAG CCTAAACATC ATGGTCGATA AAGTCGCCGT GACCGACGGC ATCGCCCAAG TCGATTATCA GGTGAGTAAC CAAGACGATG AAGCCGTAGT CGGTATTCCC TCGGCCACCT TCATTGCGGC GCAATTACTG CCTCAGGGCG CGACAGGTGC GGGCAATAGC AGTGAGTGGC AACATTTCAC CTCTGAAACG TGCGCCGCTT CTTGCCCAGG CACATTTGTC GACTATAAAA ACGGCCATTA CAGCTATCGT TTCAGTGCCA CATTTAACGG CATGAATGGT GTGAGCTTCC TTAACGATGC GACCCAACGA GTCGTCATTA AACTCGGCGG AGATGCATTA GCCGATGGCA CTGCGCTCCC CATTACCAAT CAACACTACG ATTGGCAAAC CTCGGGTAAT ACCCTAGCCT ACAGCCGTAA CTTAATCACT ATTGAAACCT GTAATAGCTG TCACAGTAAT TTGGCGTTCC ATGGTGGCCG TTACAACCAA GTTGAAACCT GCGTAACTTG TCATAACAGT AAAAAAGTCA GTGATCCTGC GGATATTTTC CCGCAAATGA TCCACAGCAA GCACTTAGCG GGTTTCCCTC AATCCATCAG TAATTGCCAG ACTTGCCACG TTGATAATCC TGATTTAGCC GAAGCTCAAA ACTGGCATAG AGTCCCCACC ATGGAAGCCT GTGGTGCCTG CCATACCCAA ATTAACTTCC CTGCGGGCCA AGGCCATCCT GCGCAAGCAG ATAACAGCAA TTGCGTTGCC TGCCATAATG CCGATTGGAC CGCCAGCGTA CACGGTAATG AAGGTCAAAC AGCCGCGTTA GCCCAGTTTA GTCCTAGCAT CAGTAGCGCA AGTATGGATG CCAATGGCAC AGTGACAGTT GCCGTGACGC TGAGCAATCC ATCCACCGGT ACTGTATACA GTGATAGCGC AGATAAGCTC AAATTTATCA GCGATCTAAG GGTCTATGCT AACTGGGGAA CTAGTTTCGA TTACAGTACC CGCTCCGCGC GCTCTATTCG TCTCCCCGAG TCCACACCAG TCTCTGGCAA CAACGGCACT TACACTTATA CCATTTCGGG TCTCACGGTT CCGGCAGGAA CTGAAGCGGA CCATGGCGGC TTAGCGATTC AAGGCCGAGT TTGCGCCAAA GATAAAGTAT TAGTGGATTG CAGCACTGAA CTTGCCGAAG TTCTGGTTAT CAAGGCAAGC CATAGTTACT TTGATATGTC AGCCTTAAGT ACCACCGGCA GACGCGAAGT CATTAGCAAT GCCAACTGTG CTAGCTGCCA CGGCGATCAA CAACTGAATA TTCATGGCGC CCGTAATGAT TTAGCGGGCC AATGCCAGCT TTGCCACAAC CCGAATATGC AGGCCGATGC CACAGCGGTA AATCCCTCCA TTACCTCCTT TGACTTTAAG CAGTTAATCC ATGGGATCCA TACCAGCCAA TTTGCCGGTT TTGAAGACCT CAACTACCCA GGCAAAATCG GTAATTGTGC TCAATGCCAT ATCAAAGATG CTGCAGGAGT TTCAACGGTT GCCCTCCCCT TAAACGCGGC GGTTCAACCA CTTGCACTGA ACAACGGTAC CTTTACCAGC CCAATAGCTG CGGTGTGCAG TAACTGTCAC TCAAGTGATG CCACACACAA CCATATGATG CAGCAAGGTG CAGTATTTGC GGGAACAAAA GCAGATGCCA CCGCGGGCAC TGAAACCTGT GCTTTCTGCC ACGGACAAGG CGCTGTCGCC GACGTTTTAA AAGTGCACCC TATTAAATAA
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Protein sequence | MNKFARFSTQ LSLLLALTTL LTACGGSDGN DGDPGEPGKP PAMTITSLNI MVDKVAVTDG IAQVDYQVSN QDDEAVVGIP SATFIAAQLL PQGATGAGNS SEWQHFTSET CAASCPGTFV DYKNGHYSYR FSATFNGMNG VSFLNDATQR VVIKLGGDAL ADGTALPITN QHYDWQTSGN TLAYSRNLIT IETCNSCHSN LAFHGGRYNQ VETCVTCHNS KKVSDPADIF PQMIHSKHLA GFPQSISNCQ TCHVDNPDLA EAQNWHRVPT MEACGACHTQ INFPAGQGHP AQADNSNCVA CHNADWTASV HGNEGQTAAL AQFSPSISSA SMDANGTVTV AVTLSNPSTG TVYSDSADKL KFISDLRVYA NWGTSFDYST RSARSIRLPE STPVSGNNGT YTYTISGLTV PAGTEADHGG LAIQGRVCAK DKVLVDCSTE LAEVLVIKAS HSYFDMSALS TTGRREVISN ANCASCHGDQ QLNIHGARND LAGQCQLCHN PNMQADATAV NPSITSFDFK QLIHGIHTSQ FAGFEDLNYP GKIGNCAQCH IKDAAGVSTV ALPLNAAVQP LALNNGTFTS PIAAVCSNCH SSDATHNHMM QQGAVFAGTK ADATAGTETC AFCHGQGAVA DVLKVHPIK
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