| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2474 |
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| Symbol | |
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| ID | 4253045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2942574 |
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| End bp | 2943476 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119106 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_734602 |
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| Protein GI | 113970809 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00188397 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCCAT TGGTTTATCA CGCCAGCTAC TCCAAGCTGG CGTTACCCTC CCACCACCGC
TTTCCCACGA CCAAATACGC ACGCCTTTAT CAGTATCTGC TCGATAATCA ACTGGCTGTA
CCGGCTCAAT TCCATACTCC CTCGCCGATG ACGGCAGAAG ATGTAATGCA GGTGCATCAG
CAAGATTATG TCGAACAATT TATCCAAGGC AGCTTAGCCA GTACGGCCTT AAGACGCATC
GGCTTTCCAT GGAGTGAAGC CTTAGTCGAG CGCACTTTAC ACTCGGTATC GGGGACGAGT
TTGACCGCAC ATTTAGCCTT GCAAACGGGT ATTGCCCTTC ACTTAACGGG CGGTTATCAC
CATGCACACT ATGACTTTGG CAGCGGCTAC TGTATTTTCA ACGACTTGAT TATCGCCGCC
CGCAAACTGA TGGCCGAGCA GCAATTACAT AAGGTGCTAA TTTTTGACTG TGACGTGCAT
CAAGGTGATG GCACAGCCAC CCTCAGCCAC AGGCATCAGG GCATTATCAG TTGCTCCATC
CATTGCAAAG AGAATTTTCC CAGTCGTAAA CAGCAGTCAC ACTATGATAT TGAACTGACG
AAAGGTGCAG ATGACAACGC TTATCAGGAA ACCGTCGAAC AGACTCTCGA ACTGCTGATT
CGACTCCATC AGCCAGATCT CATCCTGTAT GACGCCGGCG TCGATATTCA TCAAGATGAT
GACTTAGGGC ACCTAAAGAT CAGCAAGCAG GGATTGTATC AACGTGATCT AACCGTGTTA
TCGATGGCAA AAGCGGCAAA TATTCCTGTT GCGGCGGTAA TTGGCGGCGG CTACAGCCGA
GACGAACTAC AATTAAGCCA AAGACATAGC CAACTTTTTA TTGCAGCCAA CCATTTGTGG
TAG
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| Protein sequence | MIPLVYHASY SKLALPSHHR FPTTKYARLY QYLLDNQLAV PAQFHTPSPM TAEDVMQVHQ
QDYVEQFIQG SLASTALRRI GFPWSEALVE RTLHSVSGTS LTAHLALQTG IALHLTGGYH
HAHYDFGSGY CIFNDLIIAA RKLMAEQQLH KVLIFDCDVH QGDGTATLSH RHQGIISCSI
HCKENFPSRK QQSHYDIELT KGADDNAYQE TVEQTLELLI RLHQPDLILY DAGVDIHQDD
DLGHLKISKQ GLYQRDLTVL SMAKAANIPV AAVIGGGYSR DELQLSQRHS QLFIAANHLW
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