Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1989 |
Symbol | |
ID | 4252562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2365483 |
End bp | 2366445 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638118602 |
Product | inner membrane ABC transporter permease protein YjfF |
Protein accession | YP_734119 |
Protein GI | 113970326 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0141667 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGCAA GACGTTTTAT TCCGCTGTGG ATCACCGCCT CATTGCTGCT GACCATGTTT TTGGTCGGCA CCTTTCAGTT TGACGGTTTT GCCAGTGGCC GAGTGGTCAC CAACCTGTTG CGTGACAATG CATTCCTATT GATCACCGCA TTAGGTATGA CCTTAGTGAT TATCTCTGGG GGGATCGATC TCTCGGTTGG CGCCGTCATC GCCTTAAGTG GAGTCGTCAC CAGTTTATTG ATCACCGAGT ACCAGTGGCA TCCATTGTTG GCCTTTGCGG TTATTCTGCC CCTGGGCACT CTGTTTGGCG CGCTCATGGG CACTATTATC CATGTGTATA AGTTGCAGCC ATTTATTGTG ACGCTTGCGG GGATGTTTCT GGCGCGGGGC TTAGCGACGA CGCTCAGCGA AGAGTCGATT GCCATTGACC ATCCATTTTA CGATGCGGTG GCCGAGATGA GCATTGCACT ACCAGGCAAT GGTGCGCTCG ATTTAAGCTC GCTGATCTTT ATCCTGTTCT TTGTGATTAT CGCCGTGGTT ATGCATTACA CCCGTTTTGG TACGAATGTG TATGCCATTG GTGGCAATCA ACATTCCGCC GAGCTAATGG GGATTTCCAT CGCTAAAACC ACCATCAGTA TTTACGCCAT CAGTAGCTTC CTGGCGACGC TGGCGGGCAT TGTCTTTACC TTTTACACCT TCTCTGGCTA TGCGCTTGGC GCCATTGGCG TCGAACTGGA TGCCATTGCG GCCGTAGTCA TTGGTGGCAC CCTGTTAACT GGCGGCAGTG GCTTTGTGCT CGGCACTGTG CTTGGGGTGA TTTTGATGGG GGTGATTCAA ACCTATATTA CCTTCGATGG CAGCTTAAGC AGTTGGTGGA CCAAGATTGT CATTGGCCTG TTACTGTTCT TCTTCATCCT GTTACAGAAA CTCTTGAATG GACGCAAAAC ACAACATGGA TAA
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Protein sequence | MIARRFIPLW ITASLLLTMF LVGTFQFDGF ASGRVVTNLL RDNAFLLITA LGMTLVIISG GIDLSVGAVI ALSGVVTSLL ITEYQWHPLL AFAVILPLGT LFGALMGTII HVYKLQPFIV TLAGMFLARG LATTLSEESI AIDHPFYDAV AEMSIALPGN GALDLSSLIF ILFFVIIAVV MHYTRFGTNV YAIGGNQHSA ELMGISIAKT TISIYAISSF LATLAGIVFT FYTFSGYALG AIGVELDAIA AVVIGGTLLT GGSGFVLGTV LGVILMGVIQ TYITFDGSLS SWWTKIVIGL LLFFFILLQK LLNGRKTQHG
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