Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1654 |
Symbol | |
ID | 4252230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1953992 |
End bp | 1954948 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638118266 |
Product | auxin efflux carrier |
Protein accession | YP_733787 |
Protein GI | 113969994 |
COG category | [R] General function prediction only |
COG ID | [COG0679] Predicted permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000818504 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCAATA TCATTGAGCA GTTGTTGTTT TCTGCTTCAA TAACCGGTCC CATCTGTTTA ATGCTAGCCT TAGGCGTGAT GCTTAAACGC ACCCAAGTGA TTGATGAGCA CTTTATTGAT GTCGCCTCTA AGCTGGTTTT TAATGTCACC CTGCCCGCGC TGTTGTTTCT CAGCATCATT AGCTCACACC ATGATCTTGC CGCCAGTGCG CCGTTAATCG GTTATGGCTT ATTAGCCAAC TTACTGTTTT TTATTCTCTC GACCTACGCG ACGAAACGAT TTTTCCCTGA GCCGAAAGAT CAAGGCGTCA TCATTCAAGG GGGATTTAGA GCCAATACCG CCATTATCGG CTTAGCCTAT GTCTCTAATG CCTATGGCGA ATCGGGCGTT GCCTTAGCGG CCGTTTATGT GGCTTCCATG ACGCTGCTCT ACAATATTCA AGCCGTGATT TGTTTAAGCC CGCGGGGAGA AGAATCGAGC CGCCGCGCCT TTGCGGTGAT CATTAAAACC ATCACCAAAA ACCCGCTGAT CATTGCCATC ATGCTCGGCA TGCTGTTTTA TCTGCTGGCG ATCCCTGTAC CTAAAATGGT TCTAGATGCC GGACAATACT TTGCCAATAT GACGCTCCCC TTAGCACTGC TGTGCACTGG CGGCTCACTG GATATTGGCT CGCTCAGACA TGAAAAATAT TCCACTTGGT TCTCGACCGC CTTAAAACTG ATCTTTGCCC CGCTGTTCAT CACCCTGGGG GCCTTGATTC TTGGCTACCG CGGTGTGGAA TTGGCCTTAG TGTTTTTAAT GAGCGCCGCG CCCACAGCGG CCGCAAGTTA TGTGATGGCG CGGGCCATGG GGGGAAATGC CACCCTAGCC GCCAATATCA TCGCCCTCAC CACAGTTTGC TCACTGATCA CCTGCACCTT AGGCATTTTT ATCCTGTCGA CCCTAGGGCT GATTTAA
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Protein sequence | MGNIIEQLLF SASITGPICL MLALGVMLKR TQVIDEHFID VASKLVFNVT LPALLFLSII SSHHDLAASA PLIGYGLLAN LLFFILSTYA TKRFFPEPKD QGVIIQGGFR ANTAIIGLAY VSNAYGESGV ALAAVYVASM TLLYNIQAVI CLSPRGEESS RRAFAVIIKT ITKNPLIIAI MLGMLFYLLA IPVPKMVLDA GQYFANMTLP LALLCTGGSL DIGSLRHEKY STWFSTALKL IFAPLFITLG ALILGYRGVE LALVFLMSAA PTAAASYVMA RAMGGNATLA ANIIALTTVC SLITCTLGIF ILSTLGLI
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