| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1402 |
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| Symbol | |
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| ID | 4251421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1632436 |
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| End bp | 1634481 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638118001 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_733537 |
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| Protein GI | 113969744 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000103328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGC ATTTTATTCG TCCAGAATGG TTACTCGCCC TGTTGCCACT CGCCATCATC
CTGTGGGCGC TATGGCGCCA ACACCAGAGT AACAGTGCTT GGAATCGCTA TATTGCGCCG
CACTTGGCCA AAATATTGGT CACAGAGGGC ACGCAAAAAT CCCGTCGACC ATTGCATATC
TTGGCTTTCA CTTGGGTGAT TGCCACCTTA GCCTTAGCGG GCCCCGCCCT CAATAAGCAA
ACCTTGCCGG TTTTTGCCGC CGAGCAAGGC CGAGTGTTGG TGATGGATAT GTCTGTCTCC
ATGTTTGCCA CCGATCTGGC GCCCAACCGC TTAACCCAAA CCAAGTTTCG GGCGACGGAT
TTGCTCCGCG GCTTAAAAGA AGGCGAAACC GGCCTGATTG CCTTCGCTGG CGATGCCTTT
ACCATAAGCC CGCTCACCCG AGACACGGGC ACGCTGCTTA ATTTATTACC CACGTTAAGC
CCTGACATTA TGCCCGTGTT GGGCTCAAAC CTAGCGGCCG CGCTAACCCA AGCTAAAAAT
CTACTGGCAC AGGGCGGGCA TCTACGGGGC GATATTATTG TGATGACAGA TGGCATCACC
CCGAGGCAAT TCGATGAGGC TAACTCTGCC TTAGCCGGTA GCCAATATCG CCTCGCGATC
ATGGGATTTG GTAGCCCCCA AGGCGCGCCC ATCCGCTTAC CCGATGGCCA ATTACAGCGT
GACAGCAGCA ATGAAGTCGT TGTCGCCAAA ACCGACTTTG GCTTACTGCA AAAATTAGCC
GATAACCATA ATGGCATCAT GATCCCCAAT CGTGCCGATG GTCAGGATTT AGCACAGTTG
CAACATTGGT TGAGTGACAG TGGCGATGCC AAAGCCACGG ATCTCGATGG AGAAACCTGG
CAAGATCTCG GCCCTTACCT CGCCTTACTC TTACTCATCC CTGCCCTGCT GAGCTTTAGG
CAAGGCATGC TCGCTAACTG GCTGCTGATG GGATTGGGCG GTCTATTGCT CAGCGCTGCG
CCGCAAAGCG CCCATGCCAG CGCATGGGAC TCACTCTGGC ACACCCAAGA GCAACAGGCG
ATGCAGGCCT ATCAAGCTGA GGATTACGCC AATGCCGCAC AAAAATTCGA GACGCCCCAA
TGGCAAGGCG CGGCGCAGTA CAAGGCGGGC GAGTACGAAC AGGCGCTAAA AAGCTTTGAG
CAAGATAGCT CTGCCAATGG CCTTTACAAC CAAGGCAACG CGCTGATGCA ACTCGGTAAA
CCCGACAAAG CCAAGGAGCG TTATCAGGCC GCACTCGACA AGCAGCCCGA GTTTCCACAG
GCCAAGGCCA ACCTTGAGTT AGCAGAGAAA TTGCTGAACC AGCAGCAGTC GCAGCAAAAT
GCTGACAATC AAGATAAACA GTCTCAAGGC GATCAAAACC AACAGGGACA GGACCAGAAC
GATCAGCAGC AGGGAGATCA ACAATCCTCG CAAAACGACC AAGCTCAAGA TCAGTCTCAA
GAGCAGCAGT CCCAACAGCA AAATAATTCT GATCAAGCGG ACAAAAAACC ATCGCAGGAG
CAAAGTACCT CATCAGAGCA GAATGATCCT GAGCAAGGCG CGCAGGATAA ACAGCAAGCG
AGTGATGAAA ACGCCAAGCA AGATCAGCAA GATGCACAGC AGGAACAACA GCAGGCCGAG
CAACAAGCCA ATCAGCAAAA CGGCGCCGAT AACAATGCTG AAGATAAAGA AGATCCAGCC
AGCAACGAGG CAAAAATGCA GGCAAAGGTC GAGGATGATA AGTCCAAAGC CAAGCAAGAA
CAGCAACAGG CCGTAGCGCA AAAAGCGGAT AAAGAGAAAC AGGCGCAGGC GGATAAAAAA
CCAGATACCG CTGTTGAGTC TGTTGAAGCG CCGCCGAGTA ACAGCGAGCC TTTACCCGCG
GAGATGCAGC GAGCACTGCG GGGCGTGAGT GAAGATCCAC AGGTGTTACT GCGTAACAAG
ATGCAACTCG AATATCAAAA ACGCCGTCAA AATGGCCAAA TATCAAGGGA TAACGAACAG
TGGTGA
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| Protein sequence | MSLHFIRPEW LLALLPLAII LWALWRQHQS NSAWNRYIAP HLAKILVTEG TQKSRRPLHI
LAFTWVIATL ALAGPALNKQ TLPVFAAEQG RVLVMDMSVS MFATDLAPNR LTQTKFRATD
LLRGLKEGET GLIAFAGDAF TISPLTRDTG TLLNLLPTLS PDIMPVLGSN LAAALTQAKN
LLAQGGHLRG DIIVMTDGIT PRQFDEANSA LAGSQYRLAI MGFGSPQGAP IRLPDGQLQR
DSSNEVVVAK TDFGLLQKLA DNHNGIMIPN RADGQDLAQL QHWLSDSGDA KATDLDGETW
QDLGPYLALL LLIPALLSFR QGMLANWLLM GLGGLLLSAA PQSAHASAWD SLWHTQEQQA
MQAYQAEDYA NAAQKFETPQ WQGAAQYKAG EYEQALKSFE QDSSANGLYN QGNALMQLGK
PDKAKERYQA ALDKQPEFPQ AKANLELAEK LLNQQQSQQN ADNQDKQSQG DQNQQGQDQN
DQQQGDQQSS QNDQAQDQSQ EQQSQQQNNS DQADKKPSQE QSTSSEQNDP EQGAQDKQQA
SDENAKQDQQ DAQQEQQQAE QQANQQNGAD NNAEDKEDPA SNEAKMQAKV EDDKSKAKQE
QQQAVAQKAD KEKQAQADKK PDTAVESVEA PPSNSEPLPA EMQRALRGVS EDPQVLLRNK
MQLEYQKRRQ NGQISRDNEQ W
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