| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0825 |
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| Symbol | |
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| ID | 4250757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 964562 |
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| End bp | 968860 |
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| Gene Length | 4299 bp |
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| Protein Length | 1432 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638117388 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_732962 |
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| Protein GI | 113969169 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00541451 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGAAC TTCGAATCGA TAATCAGATA GTCACGGCCG AGCCGAACGA TAACCTACTT
CGGGCAGCCA GTAAGGCTGG CATAGCAATT CCGAGTCTGT GCGATCCAAC AGACGCCACA
CGGCAATTGG GCGCGGCTCC CCATGCCGAT AAACAGGACT GCAACCTCTG CTTAGTGCAA
ATCGAAAATA CCGATGCCAG CCTGCGCTGC GTTAAAGCCT GTGAAACGCC CGCCGAAGCG
GGCATGAAGG TCATCACCCA ATCGGCATAT TTAACCAAAC AGCGCCAAGC TGCATTGAGC
ACAATTTTAA GTGACCACTT TGCCGATTGT GAGGCGCCTT GCCAACAGGC CTGCCCCGCG
GGTGTCGATG TGCAAAGTTA CCTGTACCAC ATTGCCCAAG GCGACCATAG CCAAGCCATT
AAAGTCATTA AAGATACCCT GCCGCTGCCG CTGTCGATTG GCCGAGTCTG CCCCGCGTTT
TGCGAGACTG AATGCCGCCG CGGCCTCGTC GATGACCCCA TTGCTATTCG TCAACTCAAG
CGCCACGCCG CCGATTTAGA CTTGGCCGAC GATGAACAAG GTGGCAGTTA TCAACCACCA
CGCCTCGCAG ATACGGGCAA AAAAATTGCC ATTATTGGCG CGGGCCCCGC AGGCTTAAGT
GCCGGTTATT ACCTGTCAAA CCAAGGGCAT AGTGTTGAGA TTTTTGAAGC CATGCCCAAG
GCGGGCGGCT GGCTGCGCTA CGGGATCCCC GAATACCGTT TACCCAAGGC AATTCTCGAT
AAAGAAATAG AGCTGCTATG CCGCAATGGG TTAACCATTC ATACGGATAC TCGCCTCGGC
CATGAAATTC ATTTAGCCCA ACTGGTCGCC GATTTCGATG CGGTGTGCCT TGCCATCGGC
GCCCAAAAGG CGGTGCCGAT GAACTACAAA GGCTCAGAAC TTGCGGGCTG TTACCTGGGG
GTGGGTTTTC TTAAGGAACA TTGCCTCGAC AAACAATTGA AGTTGGGCAA AAAAGTCGCC
GTGATTGGTG GTGGCAACAC CGCCATCGAC TGCGCCCGCA CCGCCGTGCG CGAAGGCTGC
GATGTCACCT TAATCTACCG CCGTACCCGC GCCGAAATGC CCGCCGAAGC CTACGAAGTA
CATGAGGCCG AAGTTGAAGG CGTCAAATTC CATTTCTTAA CCAATCCCAT TGAAAATCAT
AGCGATGCCA ATGGACAGGT AGAAGCTGTC ACCTTCAGCA AAATGGCACT CGGCGAAGCC
GATGCCTCGG GCAGACGCGC GCCCGTGGAC ACGGGGGAAA CCTTTACCGA GGCCTTCGAT
ACCGTTATCG CCGCCGTATC CCAAGCGCCA GATCTGAGTT TTATGCAAGA TCCTATGGGG
CAACTCAGCC ATGGCGAGCT GGCGCTGAGC CGCTGGAACA CCCTGATAGG CTGCGAGCAA
ACCATGTCAT CGGGTGTAGA AAAACTGTTT GTGATGGGCG ATGCCCGCAG AGGTCCTGCC
ACCGCCGTAG CCGCCATTGG CGATGGCCGT AAAGCGGCAA TCGCTATTGA TAAGATGCTA
AAAATCGGCC TTAGCTGCGA TTTACATGCC CATGAGTTTA ACTCGGTCAA AACCATACCA
AGCGCCCTCA TTCCAAACGC TCTTAAGCAA ACCGAAACAA GCTCAAAAGC AGGGTCAACG
CATTATCCCC ATACGCCGCG TCAGCCCCGC TTGAAGATGC CCGAACTCAC GGCGCTGCAA
CGGCTACTGA ATTACAGTGA AGTCGAGTTA GGTTTTCCCG CAGATGCCGC CATGCAAGAG
GCGGCGCGCT GTCTCGAGTG CGCCTGTCAG GCCAATACTG ACTGTAAGCT TAGGGATTAC
GCCACGGATT ATGGTGTCGA GGCCAAAAGC TTAGCCACTG AAAATGCACG GCATTTCAGT
GTTGATAAGA GCGCACCCTT TATTCAATTC GATGCTAATC GCTGTATTAG CTGCGGTAAA
TGCGTCGATG TGTGTCAACA GCAGAGTGGC CACTGCGCGA TTCAATTTAG CCAAGATTCC
TATCAGGCGC TGCCGCAGGA AATGACTCAA CACATGGAGC GCCGCGCGCC GAGAGTCGGC
TTTAGTGCGA GCATGGCCGA TAGCCTCTGT GTGCAATGTG GTAACTGTGT ACAGGTTTGT
CCGACGGGCG CACTGGTCGA TGCCCGAGAT AAACGCCAAG GCGATAGCAC AGAATTAAAA
ACTGCCTCGA CGATTTGTAC TTACTGCGGC GTTGGCTGTC GCCTCGACCT TAAAATCGAC
TCCAACGCCA ATCGCATTCG TCATATCGAA GGCAATAAGG ACTCGGTCGT TAACCAAGGC
ATGCTGTGTG TTAAGGGACG TTTTGGCTTC GATTTTATTC ACAGCGACAA ACGTCTCACT
ACGCCACTAA TACGTAAAAA CGGTGAGCTG CAACCGAGTA GTTGGCCCGA AGCCATTGCC
TATGTGGCAA AACGCTTAAC CGAGATAAAA CAAAAAGATG GCAGCAATGC TCTCGCCAGT
CTCGCCTCGG CCAAGGCCAC CAACGAAGAT AACTTTGTGC TGCAAAAGTT TGTTCGCAGT
GTTCTTGGCA CCAACAATAT TGATCACTGC GCCCGCCTAT GCCACTCATC GACGGTAACG
GGTTTGCAGC AGAGTATTGG TAGCGGTGCC ATGACCAATG ATATTCCGAG CATCAAGGAC
TCGGACGTCA TCTTTATCTT AGGCTCAGAC ACCACCTGCG CCCATCCGAT TATCGCCTCT
AAAATTCAAC AGGCAGTGAT GCAGCACGGC GCGCGTTTGC TGGTTGCCGA TCCGAAGCGG
GTTGGCATTG CCGAAAAGGC CGAGCTGTAT GTCGCCCACA GACCGGGGAC GGATGTGATG
CTGCTCAACG CCATTATGGC AGAAATTATT CGTAACGATT GGCAGGATAA AGACTATATC
GCCGAGCGTA CCGAAGGCAT TGTGGCCCTC TATGCGGAGT TATCCAAGGA GGATTACTCC
CTCGAAAACG CAGCACTCAT CACGGGCGTA AAAGCCGAAG ACATTGCCCG CCTCGCGCGC
ACCATAGGCA CGGCGCAAAA GACCGCGGTT TATTACGCCA TGGGTATCAC TCAGCATACG
ACTGGGCACG ATAACGTCAC GGCTATCTCT AATTTGCAGC TACTTTGCGG CAATATTGGT
GTGTCAGGCG CGGGGATTAA CCCACTTCGC GGCCAGAGTA ATGTCCAAGG TGCCTGCGAC
ATGGGCGCGC TACCCAACTA TTTTACCGGT TACCAAAAGG TCACGGATAT TCATGCCAGA
ATGCGCTTTG AAGACCACTG GCAAACGCCG TTATCGGAGG AGATTGGCGT CACCGCAACC
CATATGATGC ATGATATTGC CAAGGGCAAC ATTAAAGCCT TGTATGTGAT GGGTGAGAAT
CCCGTGCTCA GCGACCCCGA CCAAGCCCAT GTACTTAATG CCTTGAGCAA AGTCGAGTTT
TTGGTGGTGC AGGATATCTT TTTAACCGAG ACGGCCGAGC TTGCCCATGT GGTCTTGCCC
GCCGCCGCAT TCGTGGAAAA ACGCGGTCAC TTTACCAATA CCGAGCGTCG GGTGCAGCGA
CTCGAGCAAG CGCTCGCCTC ACCGGGTGAA GCCTTACCCG ATTGGCAGAT AGTGCAGGCC
GTCGCTAATG CCATGGGCGC TAACTGGGAT TATGCCAACG AAGAAGCCAT TTGGTGCGAG
ATCAACGAAC TTACTCCGCA GTATCGCGGT ATTCGCTGGG ACAGATTAAG TGCCAATGCC
GAAGGTCAAA TCTCTCAAGG GATTCAATGG CCCTGTCCAG ATGAAACCCA TCCCGGGACG
CCGATTATGC ACCAAAGCCA ATTCACTCGA GGCTTAGGCT TATTTACCCC CGTTAGTTAT
CGCCTGCCTG CAGAGATGCC CTGCAACGAG TATCCGCTGA CGCTATCGAC GGGGCGGCTA
TTGGAGCAAT TCCACACGGG CACACTCACC CGTAAAACAC CAGGGCTGGA TCTACTCGGC
GCGCCTAAGG TGATGATTTC TGTCTATGAT GCGGAGCAAC TGGGGATCCA TAACGGCGAT
AAACTTCGCC TTACCACCCG CCGCGGAGAG ATTGAAATCG ATGCCTTTGT GACTAAACGC
GCCCAAGCGG GCGTGCTGTT CCTGCCGTTC CATTTTGTGG AGGCCGCAGC GAATAAGCTC
ACGATCAATG CCTTAGATCC TGTGGCTTAT ATTCCCGAAT ATAAGGTCTG CGCGGTCAGG
GCTGAAAAGG TGACAACAAG CGTGAGTGAA CCAGCCTAA
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| Protein sequence | MIELRIDNQI VTAEPNDNLL RAASKAGIAI PSLCDPTDAT RQLGAAPHAD KQDCNLCLVQ
IENTDASLRC VKACETPAEA GMKVITQSAY LTKQRQAALS TILSDHFADC EAPCQQACPA
GVDVQSYLYH IAQGDHSQAI KVIKDTLPLP LSIGRVCPAF CETECRRGLV DDPIAIRQLK
RHAADLDLAD DEQGGSYQPP RLADTGKKIA IIGAGPAGLS AGYYLSNQGH SVEIFEAMPK
AGGWLRYGIP EYRLPKAILD KEIELLCRNG LTIHTDTRLG HEIHLAQLVA DFDAVCLAIG
AQKAVPMNYK GSELAGCYLG VGFLKEHCLD KQLKLGKKVA VIGGGNTAID CARTAVREGC
DVTLIYRRTR AEMPAEAYEV HEAEVEGVKF HFLTNPIENH SDANGQVEAV TFSKMALGEA
DASGRRAPVD TGETFTEAFD TVIAAVSQAP DLSFMQDPMG QLSHGELALS RWNTLIGCEQ
TMSSGVEKLF VMGDARRGPA TAVAAIGDGR KAAIAIDKML KIGLSCDLHA HEFNSVKTIP
SALIPNALKQ TETSSKAGST HYPHTPRQPR LKMPELTALQ RLLNYSEVEL GFPADAAMQE
AARCLECACQ ANTDCKLRDY ATDYGVEAKS LATENARHFS VDKSAPFIQF DANRCISCGK
CVDVCQQQSG HCAIQFSQDS YQALPQEMTQ HMERRAPRVG FSASMADSLC VQCGNCVQVC
PTGALVDARD KRQGDSTELK TASTICTYCG VGCRLDLKID SNANRIRHIE GNKDSVVNQG
MLCVKGRFGF DFIHSDKRLT TPLIRKNGEL QPSSWPEAIA YVAKRLTEIK QKDGSNALAS
LASAKATNED NFVLQKFVRS VLGTNNIDHC ARLCHSSTVT GLQQSIGSGA MTNDIPSIKD
SDVIFILGSD TTCAHPIIAS KIQQAVMQHG ARLLVADPKR VGIAEKAELY VAHRPGTDVM
LLNAIMAEII RNDWQDKDYI AERTEGIVAL YAELSKEDYS LENAALITGV KAEDIARLAR
TIGTAQKTAV YYAMGITQHT TGHDNVTAIS NLQLLCGNIG VSGAGINPLR GQSNVQGACD
MGALPNYFTG YQKVTDIHAR MRFEDHWQTP LSEEIGVTAT HMMHDIAKGN IKALYVMGEN
PVLSDPDQAH VLNALSKVEF LVVQDIFLTE TAELAHVVLP AAAFVEKRGH FTNTERRVQR
LEQALASPGE ALPDWQIVQA VANAMGANWD YANEEAIWCE INELTPQYRG IRWDRLSANA
EGQISQGIQW PCPDETHPGT PIMHQSQFTR GLGLFTPVSY RLPAEMPCNE YPLTLSTGRL
LEQFHTGTLT RKTPGLDLLG APKVMISVYD AEQLGIHNGD KLRLTTRRGE IEIDAFVTKR
AQAGVLFLPF HFVEAAANKL TINALDPVAY IPEYKVCAVR AEKVTTSVSE PA
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