| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1632 |
|---|
| Symbol | |
|---|
| ID | 4476596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1919548 |
|---|
| End bp | 1922166 |
|---|
| Gene Length | 2619 bp |
|---|
| Protein Length | 872 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639726215 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_869271 |
|---|
| Protein GI | 117920079 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.101573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAC GGCCTCTCAT TGAGCCTCAA GCACCGTTAA CCCAATGGCA AAAAAGCCTG
CCGTTTAAAC TCAGCCTGAT CCAACTGTTG ATCGCCAGCA TACTGATCTT CAGCACGGCG
TGGGTCATTC TCAACATTCA GACCCAACAG ATCAGTGAGC AACAAACTCT GCTCAATCAA
AACCATGGCC AAATCATCAT AGCCAAATTG CAGGAAATGA CCTCCCAAGT GGAGAATCAG
GTCAATGCCA TCAGCCAAAT CGCCATGCTA TACCGTTATG AGCCCGAGCA GCTCAGTAAG
AGCATTCCGG TATTACTCTC GATTGAAAAT CAAAAGGCGA TTATTTCAGG TGGCGGGATT
TGGCCCGAGC CAGGGGCATT TGACCGGCAA AAGTTTCGCG ATAGCTTATT CTGGTCACAC
AATATTCACG GCGAATTAGT CGCCATCAAT AGCTATAACG ACGACAGCTT TCCAAGCTAC
CACACCGAAG AATGGTATCG GCCAACCCGC TATTTTCCCG TGGGAAAAAT ATTTTGGTCT
AAATCCTACG TCGACCCCAC CACCCATGAG CCTATGGTGA CCGCATCGGG CGCCATGTGG
ATGGACCATC AGTTTATTGG GGCGGCCACT ACGGACATCA GCCTTGAAAA ACTTAGTCAG
CTCCTACGCA ATACCATGCT CGATGTGAGC GGCTATGTGA TAGCCCTCGA CCATCAAAAC
CAAATCTTGG CCTCGCCGAA TAGCGATAAT TGGCCGCAAT CCTCGCAAAA TCCGCCCCAT
ACGCTACAAA CCTTCGACGA GTTAGCAAAA ACAGAGGCGG CCTTCAGCCC AATCGCCTCG
GCACTGCACT TAGCCGACCG CAGTTTTATC GAACAAGCCG TGGCTGAGCG CGTATTTACC
CAAGAGCAAA TGGATAACCT CACCCGCCTA AGCGGTGACA ATGAACGGGA GATGCTATCC
GCCATCGTCA ATGACAATGC TAAGAGCCAG TTCTCGAGCC CAAGGCGGAT AGCCTCTGTT
TCATTAACAA TGGACCCCAT CCTCAAAGGG CCTTCGCTGG TGTCGGTGTT TTTAATGCCC
CACACCTACT GGAAAATTCT CGTCGTCACC CCCATCGCCC CCTTACAGGA CACGGCCAAA
AAACTTATCG AAAAAGTCGG GCTCTCCCTA GTGCTAATTC AGATGCTCGG CCTTATCCTG
CTGTTTTTGC TGCAACATCG ACTGATTATC GCCCCCATTA TGGAGATGGT GCAGGCACTC
AAACGCAATG ATTCGGCGTC TATCGAATTA AAAGCCAAGG AGCGACACGA TGAGGTCGGC
CTGCTCGCAA AAAGCTTTTT ATCCCGCACT CAACAGCTTG AAGTTGCCAT GGCCAGTTTA
GACGCCAGTA ATCTCGCGCT CGAGCAGCAA TTGCTAACCC AACAACATTT TCAGCAGGAG
TTGAGTCAGC GCAAGGAGCA ATTAAGATCC TTGCTCGACT TTTCCTCCAC CATCATTTAT
ATCAAAGACT TAAATGGCCG ATACACCTTA GTAAACAACA AATACTGCGA AGTTTTAGGG
ATTGAGCGGC GCAAGATCAT CGGAGCCACG GACTTTGAGC TGTTCCCAAA CTCACTCGCA
CAGCAGTATC AACAGAACGA CCAAAGGGTC ACCCATAGCC ACGAGGCCCT GCATTTCGAA
GAAGTCATTC CCTCCCTTCG AGGCGAACTT ATCTATCAAA TAAGTAAATT CGACATTCGC
GACGATGAGG ATAATTCCTT GGGCGTCGGC GCCATAGGCT TTAATGTGGA CTTGAGAAAA
CGCCAAGAAA AAGAACAAGA AAAGCTGCTG CAAGCGCAAT TAAGCCTGCT TAAAGAGCAG
CAGCACAAGA CCCAACTCTC GCAGCAAGAA AACAGTCAGC TCAGGGAACA ACTCGCGGCG
ATTCAAGATG AGATCAATCA GCAAATCCAA CTCAACTTGA GCAAACAGCA AAGTCAGAAA
CTGATGCAGA ACTTCCTAGC CGATGTCATG AGCCAAATGA TGCTCGAGCA GGACAAACTC
CTCGCTCAGA TCTGCCAAGT GCGCAGTAAA GAGGATGACA GCCATCAAAC CCAAGTGGTA
CAGCTGATGA GCCAGCAGGC GGCGAGACTC AGGCACATAT CGCAGCTGTT TACCGATCAG
CATAGTGAGA TACGCCCGCT GCATTTAGCC CAGTTTATCA ATCAATTACT GAGCTTATTA
CAGCCACAAT TGTTGAAAAC TCAGGTTAAG GTCAAGCTAG AGTGCGACGA GCAATTGGTG
ATAGATGGCA ATGCCTGGCA ATATTTGCAG TTTTTCTACC GGCTTATCAA CAACACCTTG
CACCATGCCT TTAAAGAGCA TAATCAAGAC AGAACCTTAG TGTTAACACT CGAGAAAAAA
GACGGTGAGT TGTACATGCA GCTTAAGGAC AATGGTGTTG GGATACCAAT AACACACCTT
GAGCAGCTAA GACAGGAAAT GCAACAAAAC CAATGTATTG GCACACTGAC TTGCATTAAT
CTTTGGATAA AAGAAGAATT ACATGGCGAG CTGAAGGTAG AGAGTGAGCT CAATCGTGGC
ACTCTGATTG AGTGCCACTG GCCATTATCT GCGATATAG
|
|---|
| Protein sequence | MDKRPLIEPQ APLTQWQKSL PFKLSLIQLL IASILIFSTA WVILNIQTQQ ISEQQTLLNQ
NHGQIIIAKL QEMTSQVENQ VNAISQIAML YRYEPEQLSK SIPVLLSIEN QKAIISGGGI
WPEPGAFDRQ KFRDSLFWSH NIHGELVAIN SYNDDSFPSY HTEEWYRPTR YFPVGKIFWS
KSYVDPTTHE PMVTASGAMW MDHQFIGAAT TDISLEKLSQ LLRNTMLDVS GYVIALDHQN
QILASPNSDN WPQSSQNPPH TLQTFDELAK TEAAFSPIAS ALHLADRSFI EQAVAERVFT
QEQMDNLTRL SGDNEREMLS AIVNDNAKSQ FSSPRRIASV SLTMDPILKG PSLVSVFLMP
HTYWKILVVT PIAPLQDTAK KLIEKVGLSL VLIQMLGLIL LFLLQHRLII APIMEMVQAL
KRNDSASIEL KAKERHDEVG LLAKSFLSRT QQLEVAMASL DASNLALEQQ LLTQQHFQQE
LSQRKEQLRS LLDFSSTIIY IKDLNGRYTL VNNKYCEVLG IERRKIIGAT DFELFPNSLA
QQYQQNDQRV THSHEALHFE EVIPSLRGEL IYQISKFDIR DDEDNSLGVG AIGFNVDLRK
RQEKEQEKLL QAQLSLLKEQ QHKTQLSQQE NSQLREQLAA IQDEINQQIQ LNLSKQQSQK
LMQNFLADVM SQMMLEQDKL LAQICQVRSK EDDSHQTQVV QLMSQQAARL RHISQLFTDQ
HSEIRPLHLA QFINQLLSLL QPQLLKTQVK VKLECDEQLV IDGNAWQYLQ FFYRLINNTL
HHAFKEHNQD RTLVLTLEKK DGELYMQLKD NGVGIPITHL EQLRQEMQQN QCIGTLTCIN
LWIKEELHGE LKVESELNRG TLIECHWPLS AI
|
|---|
| |