Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1286 |
Symbol | |
ID | 4479860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1497710 |
End bp | 1498453 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639725840 |
Product | conjugal transfer protein TrbJ |
Protein accession | YP_868926 |
Protein GI | 117919734 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACTA AGCCCCGTTT GCTGTCCGTC TCGCTCGCCG CCGTGCTGTC GGTATCGCTG CTGGCCGTGC AGCCCGCGTC CGCGCTGACG GTGTTCGACC CGTCGAACTT CGTGCAGAAC ACGCTGACAG CCATCCGCAC GCTGGAGCAG ATCAACAACC AGATCAACCA GCTCCAGAAC GAAGCGCAGA TGCTGATGAA CCAGGCGCGC AATCTGGCGA AGCTGGACTT CAACATCGTC AATCGGCTGC GCTCGACGCT CGCCACCACT GAGCGCCTGA TCGCCGAGGC ACGCGGCCTG GCCTACGACG TGCAGAGCAT GGACGCCACG TTCGCCCGCC TGTACCCGGA GCAATATGCC GCCACTATCA GCGGCGACCG CATGGCGCAG GACGCCCGCG AACGCTGGCA GAACACCTTG AACGGTCTGC ACACCGCGAT GCGGATGCAG GCGCAGGTGT CGCAAAACCT TGCTCAAGAC GAAAGTGCGC TGGCCGACCT CGTGAGCCAG AGCCAGTCGG CCACCGGCGC GCTGCAAGCC ATGCAGGCGA CGAATCAGCT TCTCGCCTTG CAGGCCAAGC AGTCGATCCA GGCGCAGCAG CTCCAGATCA CGCAAGACCG GGCCGCTTCG CTGGAACTGG CGCGGCAGGC GGCGGCGACC GAACGCGCCC GCGAAGTGCG GCGGCGCTTC CTCGGCACCG GCACACCGTA CACGCCGCAG TCCGTCAACT TCTACAACAA CTGA
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Protein sequence | MKTKPRLLSV SLAAVLSVSL LAVQPASALT VFDPSNFVQN TLTAIRTLEQ INNQINQLQN EAQMLMNQAR NLAKLDFNIV NRLRSTLATT ERLIAEARGL AYDVQSMDAT FARLYPEQYA ATISGDRMAQ DARERWQNTL NGLHTAMRMQ AQVSQNLAQD ESALADLVSQ SQSATGALQA MQATNQLLAL QAKQSIQAQQ LQITQDRAAS LELARQAAAT ERAREVRRRF LGTGTPYTPQ SVNFYNN
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