| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3865 |
|---|
| Symbol | trmE |
|---|
| ID | 4923989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4598434 |
|---|
| End bp | 4599795 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640165491 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001095987 |
|---|
| Protein GI | 127514790 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000363316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAG ATACTATCGT GGCACAAGCA ACCGCACCAG GCCGCGGCGG CGTAGGTATC
ATCAGGGTCT CTGGCGACAA GGCCAGCGAC GTAGCCATGG CGGTACTCGG GCATCTGCCT
AAAGTACGTT ATGCCGACTA CTGTGATTTC AAGGCCGCCG ATGGCGCGGT GATCGACCAA
GGCATCGCCC TCTACTTCAA GGGCCCTAAC TCCTTCACCG GCGAAGATGT GCTCGAGCTG
CAGGGCCACG GTGGCCAGGT AGTGCTGGAT ATGCTGATCA AGCGTGTCAT GGATGTCGAT
GGCGTGCGTA TCGCCAAGCC TGGCGAATTC AGCGAGCAGG CCTTCATGAA CGACAAGCTG
GATCTGACCC AGGCCGAGGC GATAGCCGAT CTGATCGATG CCACCAGTGA ACAGGCGGCC
AAGAGCGCGC TCAACTCGCT ACAGGGTGAG TTCTCCACTC AGGTCCACGA GCTGGTGGAT
CAGGTCACCA ACCTGCGTCT CTACGTGGAA GCCGCGATAG ACTTTCCCGA CGAGGAGGTG
GACTTTCTCT CCGACGGTAA GATTGCCGCT TCACTTGGCA AGATCATCAC CAAGCTCGAT
TCGGTGCAGT CCAGTGCCAA GCAGGGCGCC ATCATACGCG AAGGGATGAA GGTGGTGATC
GCCGGTCGTC CCAACGCGGG CAAGTCCAGC CTGCTCAACG CTCTCGCGGG TAAAGAGTCG
GCTATCGTTA CCGAAATCGC CGGCACCACC CGAGACGTGC TGCGAGAACA TATCCATCTC
GACGGCATGC CACTACACAT CATAGACACG GCCGGCCTGC GCGACACCAC AGACACGGTA
GAGCAGATAG GGATAGAGCG CGCTTGGGCC GAGATAGAGA CTGCCGATCA AGTGCTCTTC
ATGGTGGATG GCACCACCAC GGACGCCGTC GATCCCCATG ACATCTGGCC AGACTTTATC
GATCGCCTAC CCAAAAACCT TGGGGTGACA GTGGTGCGCA ACAAGGCCGA TCTGACCGGT
GAGTCGTTAG ACGCCACCGA CGAGCAGGGC CACAAAGTAT TCCGTCTGTC TGCCAAGACA
GGCTCGGGCG TGGATGAACT CAAGGCGCAC CTTAAGTCCC TAATGGGCTA TCAGAGCAAC
CTAGAGGGCG GTTTCCTGGC TCGTCGTCGT CACTTAGAAG CATTAGAGCT CGCCAGCAGT
CATCTGGCAC TGGGTCAGGA ACAGTTAGAG GTCTATCAAG CGGGTGAGCT CCTGGCAGAA
GAGCTGCGCA TGTGTCAACT AGCACTCTCG GAAATCACCG GAAAGTTCAC CTCAGACGAT
CTTCTCGGCA AGATCTTCAG TTCATTCTGT ATCGGGAAGT GA
|
|---|
| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRVSGDKASD VAMAVLGHLP KVRYADYCDF KAADGAVIDQ
GIALYFKGPN SFTGEDVLEL QGHGGQVVLD MLIKRVMDVD GVRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALNSLQGE FSTQVHELVD QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAA SLGKIITKLD SVQSSAKQGA IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWA EIETADQVLF
MVDGTTTDAV DPHDIWPDFI DRLPKNLGVT VVRNKADLTG ESLDATDEQG HKVFRLSAKT
GSGVDELKAH LKSLMGYQSN LEGGFLARRR HLEALELASS HLALGQEQLE VYQAGELLAE
ELRMCQLALS EITGKFTSDD LLGKIFSSFC IGK
|
|---|
| |