| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3702 |
|---|
| Symbol | |
|---|
| ID | 4921214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4406512 |
|---|
| End bp | 4407591 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640165324 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001095827 |
|---|
| Protein GI | 127514630 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGA ATTTGCAGAC TGCCCACTCT TTGTGTCTCT TACGTTTATC TGCCATCGGT
GACGTGTGTC ATGCGGTGGC CATGGTGCAG GCGATTCAGC GCCAGTATCC AGATCTTAAG
ATCACTTGGG TGATTGGCAA GGTTGAGTAT CAGCTGCTCA AGCATCTGCC CGGCGTCGAG
TTTGTGATCT TCGATAAATC TCAGGGCTGG CGCAGTTACT TCAATCTGCG CCGAGCCCTC
AAGGGACGTC GCTTCGATCT GCTGCTGCAT ATGCAGGTGG CACTGAGGGC GACCATTGCA
TCCTTGGCTA TCTCGGCTAA GGTGCGTCTG GGCTTCGATC GCGCCCGCGC CAAGGAAGGA
CAGTGGCTGG TGACCAATCG CCGGGTGGAG CCCTTGGCGA CGCCGCATGT GCTCGAGGGT
TTCATGGGCT TTGCCAAGGC CGTGGGTGTC ACGGATCTTA AGCCTAAGTG GGAGATTCCC
GTGCCCGTCG CCGATACCGA GTTTGCCCGC CAGCTGATCC CAGATGGGGA TAAGATCTTA
GTGATCTGCG CCGCCGCCAG TAAGGCCGAG CGCAACTGGC TGCCCGAGCG TTATGCCCAG
GTGGCGGACC ATGCGCTTGA GAAGGGTTAT CGCGTGCTGC TCTGCGGCGG CCCGGTTCCT
ATTGAGCGTG AGCTGGCCGA GGCGATCCTT TCACATGGCG ATCCCCGCAT CGAGAACCAG
GTGGGCAAGA CCTCGCTGAC CCAGCTTCTG GCGCTTCTGA AACAGGCGAG TATCGTCCTG
GCACCAGATA CCGGCCCGGC CCATATGGCG GTGACTCAGG GCACGCCAGT GATCGGCCTC
TACGCCCACT CTAATCCTGG ACGCACCGGG CCCTATACCT GTTTAGACAG CGTGGTCAGC
GTCTATGACC AGGCGATCGC TCAGCAACAC TCGGGCGATG TACCCTGGGG GACCCGTGCC
AAGGGGGAGC ACCTGATGGA GATGATTCAG GTGGCGCCCG TGCTGGCGGA GTTTGATCGC
CTGACGCAAG CAAGCGCCGG TGACCAAGTT AGCGAGCCGC AACAACACGC CAGCCATTAG
|
|---|
| Protein sequence | MSLNLQTAHS LCLLRLSAIG DVCHAVAMVQ AIQRQYPDLK ITWVIGKVEY QLLKHLPGVE
FVIFDKSQGW RSYFNLRRAL KGRRFDLLLH MQVALRATIA SLAISAKVRL GFDRARAKEG
QWLVTNRRVE PLATPHVLEG FMGFAKAVGV TDLKPKWEIP VPVADTEFAR QLIPDGDKIL
VICAAASKAE RNWLPERYAQ VADHALEKGY RVLLCGGPVP IERELAEAIL SHGDPRIENQ
VGKTSLTQLL ALLKQASIVL APDTGPAHMA VTQGTPVIGL YAHSNPGRTG PYTCLDSVVS
VYDQAIAQQH SGDVPWGTRA KGEHLMEMIQ VAPVLAEFDR LTQASAGDQV SEPQQHASH
|
|---|
| |