| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3669 |
|---|
| Symbol | |
|---|
| ID | 4921753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4371745 |
|---|
| End bp | 4372470 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640165291 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_001095794 |
|---|
| Protein GI | 127514597 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAC GAGAATTTAT CCTGGCCGGC GGCGCGGTAT TCGCCGCCGG TCTCTCCCCT
AAGCTTTTTG CCGCGAGTCC GACGTCGAAT CAAATACAGC AGCATTTACC GTCGGGTGAT
CAACCCCAGG CGCCGCTCAA GGTGCTGGCC CTGGTGTTTG ACGACTATGA AACCTTAGAT
CTTCATGGCC CGCTAGAGAT GTTGGGGCAT CTGCCCAGCG TCGAGATCAC CCTTATCGGC
CCCCAGTCTA TCGTGCGCAG CTATCAGGGG CCGCGAGTGG TGGCCGATCG CCAGCTCGAT
GAGGTGGTCG AGTGCGATCT CCTGCTGGTC CCCGGCGGCA TGGGCACGCG CAAGCTGGTG
GACGACACTC GCCTGTTGGA CTGGCTGAGG CGTCAGGTGA AGGTCTCTAA CAAGGTGTTC
TCCGTCTGTA CCGGCGCGGC CTTATTGGCC AAGGCCGATC TGCTCGATGG CGTGAGCGCC
ACCACCAACA AGATGGCCTA TACCTGGGTG ACAGGATTAA ACGACAAGGT TATCTGGCAG
CCCAGCGCCC GTTGGGTGGA CGATGGCCGT TTCCTCACCT CATCCGGCGT GTCGGCGGGG
ATAGATGCAG CCCTCTTCTA TATCGCCCAA ACCTATGGCG AGGCTCAGGC GCGGAAGATA
GAGACGCTCA CCGAATATCA ATGGAACAGC GACGCCGATA AGGATCCCTA CGCCGTCATA
AGTTAG
|
|---|
| Protein sequence | MNRREFILAG GAVFAAGLSP KLFAASPTSN QIQQHLPSGD QPQAPLKVLA LVFDDYETLD
LHGPLEMLGH LPSVEITLIG PQSIVRSYQG PRVVADRQLD EVVECDLLLV PGGMGTRKLV
DDTRLLDWLR RQVKVSNKVF SVCTGAALLA KADLLDGVSA TTNKMAYTWV TGLNDKVIWQ
PSARWVDDGR FLTSSGVSAG IDAALFYIAQ TYGEAQARKI ETLTEYQWNS DADKDPYAVI
S
|
|---|
| |