| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3619 |
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| Symbol | |
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| ID | 4922405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4315828 |
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| End bp | 4317951 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165241 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001095744 |
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| Protein GI | 127514547 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0440074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACA AGAAAATACG CCGCAATCTT ATCGCGAGCG TCGTGATGGG CGCCTCGCTG
TTAGCGCCAC AAGTGGCGTG GTCGGAACAA TACGCGGCTA ATTTCAAGGG CACTGACATT
CAGGAATTTA TCAACATAGT TGGTAAGAAC CTGAACCGGA CTATCATCGT CGACCCTACT
GTACGCGGCA AGATCAACGT ACGCAGTTAC GATCTGCTTA ACGACGAGCA GTACTATCAA
TTCTTCCTTA ACGTGTTGCA GGTCTATGGC TACGCCGTAG TCGAGATGGA CAACAACATC
ATCAAGGTGA TCAAGGACAA AGACGCCAAG ACCTCGGCGA TCCGCGTTGC CGACGACAGC
ACCCCTGGCC TTGGCGATGA GATGGTGACC CGCATTGTCG CGCTCTATAA CACAGAGGCC
AAACAGCTTG CTCCCTTGCT GCGTCAGCTA AATGACAACG CCGGTGGCGG TAACGTGGTC
AACTATGACC CGTCAAACGT CTTGATGATC TCTGGTCGTG CGGCCGTGGT GAACAAGCTG
GTGGAAATTG TCCGCCGCGT CGATAAGCAG GGTGATACCG AGGTACAGGT TGTGCCGCTG
GAATACGCCT CTGCCGGCGA GATGGTGCGC ATTATCGACA CCCTGTATCG CGCCAGCGCC
AACCAGTCAC AGCTACCGGG TCAGGCGCCT AAGGTGGTTG CCGACGAGCG TACCAACGCC
GTAATCGTCA GCGGTGATGA GAAGAGTCGT CAGCGCGTGG TGGCCCTGAT TAAGAAGTTA
GATGCCGAGC AGGCGACCAC AGGTAATACC AAGGTGCGTT ACCTGCGTTA TGCCAAGGCC
GAAGACTTAG TGGAAGTGCT GACCGGCTTT GCCGAGAAGC TGGCCAAAGA TCAGGAGGGC
GGTCAGGCCC AGGGTGGTCG CAGCAAGCGC CGCAACGAAA TTAATATCAT GGCCCACCCA
GACACCAACG CACTGGTGAT CAGCGCCGAG CCAGATCAGA TGCGCACCCT TGAGAGCGTC
ATCAACCAGT TAGATATACG CCGCGCGCAA GTATTGGTGG AAGCCATTAT CGTCGAGGTC
GCCGAGGGTG ACGATGTCGG CTTTGGCGTG CAGTGGGCCA CAGAGGCCGG TGGCGGTACT
CAGTTTAATA ATCTAGGCCC CACTATCGGC GAGATCGGTG CCGGTATCTG GGCGGCGCAA
GATGAGAAGG CAAGTAATAG CTGTACCGGC TCTGGTGATA ACCTGACCTG TACCGATAAT
CCGGACAAGA AGGGTGACAT CACCCTGCTG GCCCAGGCGC TGGGCAAGGT CAACGGTATG
GCATGGGGCG TGGCTATGGG TGACTTCGGC GCCCTGATCC AAGCGGTATC GAGTGATACC
AAGTCGAACG TGCTGGCAAC CCCTTCTATC ACTACCCTGG ATAACCAGGA AGCCTCCTTC
ATCGTGGGTG ATGAGGTGCC GGTACTGACA GGCAGCCAGA ACTCTAGCAA TGGTAACAGC
AACCCCTTCC AGACGGTTGA GCGTAAGGAG GTGGGCGTGA AGTTAAAGGT GGTGCCACAG
ATTAACGAAG GCACTACGGT TAAGCTCACC ATCGAGCAGG AAGTCTCAGG CATCAACGGG
AAGACAGGGG TCGATGTGAC CTTCGCGACC CGTCGCCTGA CCACTACCGT GATGGCCGAT
TCAGGCCAGA TAGTGGTGCT GGGTGGTCTG ATCAACGAAG AGGTGCAGGA GAGCGTGCAG
AAGGTGCCTT TCCTCGGTGA CATCCCTATT TTAGGTCACC TGTTTAAGTC CTCTTCTAGC
GGTAAGAAGA AGAAAAACCT CATGGTCTTC ATCAAGCCGA CCATCATACG CGATGGCGTG
ACCATGGAAG GCATTGCCGG TCGTAAGTAC AACTACTTCC GTGCCCTGCA GCTCGAGCAG
CAGGAACGTG GCGTGAACCT GATGCCAAAT ACCAGCGTGC CTATCCTGGA AGAGTGGAAT
CAGGCAGAGT ACCTGCCGCC TGAAGTTAAC GAAGTGCTGC AGCGTTATAA GGATCGCAAG
GGGTTAGACA CCAAGATGCG TGAAACCGAT CCTGCGCTGA AACAGATCAA CGAAAACAAG
CAGCAAGATA AGCAAGATGA GTGA
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| Protein sequence | MNNKKIRRNL IASVVMGASL LAPQVAWSEQ YAANFKGTDI QEFINIVGKN LNRTIIVDPT
VRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAVVEMDNNI IKVIKDKDAK TSAIRVADDS
TPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLMI SGRAAVVNKL
VEIVRRVDKQ GDTEVQVVPL EYASAGEMVR IIDTLYRASA NQSQLPGQAP KVVADERTNA
VIVSGDEKSR QRVVALIKKL DAEQATTGNT KVRYLRYAKA EDLVEVLTGF AEKLAKDQEG
GQAQGGRSKR RNEINIMAHP DTNALVISAE PDQMRTLESV INQLDIRRAQ VLVEAIIVEV
AEGDDVGFGV QWATEAGGGT QFNNLGPTIG EIGAGIWAAQ DEKASNSCTG SGDNLTCTDN
PDKKGDITLL AQALGKVNGM AWGVAMGDFG ALIQAVSSDT KSNVLATPSI TTLDNQEASF
IVGDEVPVLT GSQNSSNGNS NPFQTVERKE VGVKLKVVPQ INEGTTVKLT IEQEVSGING
KTGVDVTFAT RRLTTTVMAD SGQIVVLGGL INEEVQESVQ KVPFLGDIPI LGHLFKSSSS
GKKKKNLMVF IKPTIIRDGV TMEGIAGRKY NYFRALQLEQ QERGVNLMPN TSVPILEEWN
QAEYLPPEVN EVLQRYKDRK GLDTKMRETD PALKQINENK QQDKQDE
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