| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3407 |
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| Symbol | |
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| ID | 4923561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4057576 |
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| End bp | 4058511 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165019 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095532 |
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| Protein GI | 127514335 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTGA ATCGTATTCA GATGTTCGCT CAGGTGGTGG ACAAAGGCAG CTTCACTTCG
GCCGCCAAGG CGATGGGACT CACCAAGGCG ACGGTGAGTC GTAAGATCGC CGAGCTGGAG
ACTGATACCG GGGTGCAGCT CTTGTACCGC ACCACCCGCG CCCTCAAGCT TACCGAGGCG
GGAAGCATCT ATTACAACAA GATCCAACGG ATCCTGATGG ATCTGCAGAG CGCCGAAGAC
CAGCTCAGCG CCAGCCAAGA GACCATCAAG GGTAACCTGA AGATCGTCTG CCCGATAGAG
CTGGGCCAGC TATTCTTCGG CCGCATCTTC GCCCGCTTTC TAGAGGCGCA TCCCGAGATG
ACCCTGGACG CCGAGCTGAC CAACCGTAAG GTCGACATGA TAGAGGAAGG AATAGATATT
CTGTTTCAGG TCTCAGATGT GCGCGACTCG CGGCTGCAAT CCTATCGTGT GCTCAACACA
GACAAATCCC TGGTGGCCAG CCCAGACTAT CTGGCCCGCC ACGGCACGCC AGCCACGCCG
CAGGATCTGA TCGACCACAA GGCGATTCGC CTCAAATCGA CCCACATCGA CGGTGGCTGG
AGATTGTTCG ATGGTCAGCA GTGGATCACC ATAGAACCCG AAGCCCAGCT GACGGTCAAC
AATGTCACCC TGGCCCGTGA GGCCGCCATC GAAGGATTGG GGATCGCCAC GGCGCCAACC
CTGGTGGCCC AGGCTGCCAT CGACGAGGGG CATCTTATCC CCCTGTTGAC CGACTTTCCC
ATGGCGCAGA CCGCCATTAC CCTGAGCTTT CCCCGCCGCG CCTACCTGCC GCGCAAGTAT
CGCGCCTTCA TCGAGTATAT CTATCTGTCG CTGTTCGACC GCAGGCCCGG CGAGATACTG
GAGATCCCAG ATTTCATCAC CCCGCCCCAG CGTTAG
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| Protein sequence | MDLNRIQMFA QVVDKGSFTS AAKAMGLTKA TVSRKIAELE TDTGVQLLYR TTRALKLTEA
GSIYYNKIQR ILMDLQSAED QLSASQETIK GNLKIVCPIE LGQLFFGRIF ARFLEAHPEM
TLDAELTNRK VDMIEEGIDI LFQVSDVRDS RLQSYRVLNT DKSLVASPDY LARHGTPATP
QDLIDHKAIR LKSTHIDGGW RLFDGQQWIT IEPEAQLTVN NVTLAREAAI EGLGIATAPT
LVAQAAIDEG HLIPLLTDFP MAQTAITLSF PRRAYLPRKY RAFIEYIYLS LFDRRPGEIL
EIPDFITPPQ R
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