| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3390 |
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| Symbol | |
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| ID | 4923930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4039409 |
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| End bp | 4040167 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165002 |
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| Product | uridine phosphorylase |
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| Protein accession | YP_001095515 |
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| Protein GI | 127514318 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG2820] Uridine phosphorylase |
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| TIGRFAM ID | [TIGR01718] uridine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000467764 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGATG TATTTCATTT AGGCCTGACG AAAGAGATGT TAGATGGTGC AACACTTGCT
ATCGTTCCGG GCGACCCAGA GCGTGTGAAA CGTATTGCCG AGTTGATGGA CAATCCAACA
TTCCTGGCCA GTCACCGCGA ATACACCAGC TACCTTGCCT ATATCGACGG TAAGCCGCTG
GTGATCTGCT CTACCGGTAT TGGTGGTCCA TCGACCTCTA TCGCCGTGGA AGAGCTGGCA
CAGCTGGGTA TCGACACCTT CCTGCGTGTC GGCACCACGG GTGCTATTCA GCCACAGGTT
AACGTGGGTG ATGTGATTGT GACTCAGGCG TCAGTGCGTC TAGATGGTGC GAGTCTGCAC
TTTGCACCTA TGGAGTTCCC AGCCGTGGCG AACTTCGAAT GTACTACCGC CATGGTGGCG
GCGAGCCGTG AAGCGGGTCT TGAGCCTCAT ATCGGTATCA CAGCTTCGTC AGATACTTTC
TACCCAGGTC AAGAGCGTTA CGATACCGTG ACGGGTCGTG TGACTCGTCG TTTTGCCGGT
TCGATGAAAG AGTGGCAGGA CATGGGCGTA CTCAACTATG AGATGGAGTC ATCGACTCTG
TTTACCATGT GTGCGACTCA AGGTTGGCGC GCGGCTTGTG TGGCTGGCGT GATCGTTAAC
CGTACTCAGC AGGAGATCCC TGATGAGGCG ACCATGAAGC AGACCGAGAC CAGTGCCGTG
TCTATCGTGG TAGCGGCGGC GAAGAAACTG CTGGCTTAA
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| Protein sequence | MSDVFHLGLT KEMLDGATLA IVPGDPERVK RIAELMDNPT FLASHREYTS YLAYIDGKPL
VICSTGIGGP STSIAVEELA QLGIDTFLRV GTTGAIQPQV NVGDVIVTQA SVRLDGASLH
FAPMEFPAVA NFECTTAMVA ASREAGLEPH IGITASSDTF YPGQERYDTV TGRVTRRFAG
SMKEWQDMGV LNYEMESSTL FTMCATQGWR AACVAGVIVN RTQQEIPDEA TMKQTETSAV
SIVVAAAKKL LA
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