| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3325 |
|---|
| Symbol | |
|---|
| ID | 4924035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3965280 |
|---|
| End bp | 3966449 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164937 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001095450 |
|---|
| Protein GI | 127514253 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAGACG TCGCCGATAA CTGTAAATCG AACAATCCTA CGGCACCCGT AATAGGTCTC
TCTTTCTTTG CCGTCGCCTC TGGTTTTCTG ATGAGCCTGA TCCCCCTTTC ATTGGGCAAC
TTCGGCCTGT CGCCAGATCT AGCCCCTTGG CTTGCCAGCA TCTTCTATCT GGGGTTGCTG
CTCGGCGCAT TAAGGGTAGA GCGCCTGATC GCCAAAATGG GCCACAGACG TGGCTTTGTG
CTATTTCTCT CCCTGCTGAT CGCCAGCATA GTGGCCATGT TGCTCTTGCC TGGTGCCAGC
GTCTGGCTCG CGGCGCGCCT GCTCGCGGGT TTCACCGTCG CAGGCGTCTT CGTGGTGGTC
GAATCCTGGT TACTGATGGC CGATAGCGTC AAGGCGCGCG CCAGACGACT GGGGATCTAC
ATGGCTGCGC TTTATGGTGG CAGCGCCCTC GGCCAACTGG CCATTGGTGA ACTGGGCACT
CAAGGTGTCT TACCCTATCT GTTTGTCATC GTCCTGCTCC TGCTGGCCAT TATGGCCCCA
GTGCTGATCC GCTCTGGAGA GCCGGCCCAC CAGGCTCAGC AGAGACTCTC ACTCAAGGAG
AGCGCTAACC TGAGTCGCCC GGCGATCATA GGCTGCCTGG TCTCGGGCCT GCTGCTCGGG
CCCATCTATG GCCTGATGCC CGTCTATATC GACAATCAGG TAGACGAGCC GGCCCAGACC
GGGCTCTTAA TGGCGGCTAT TATCTTGGGC GGCATGGCGG TGCAGCCGTT GATCAGCTAT
CTCTCGCCGC GGATGGACAA GCGCCTGCTG ATGGCCATGT GCACTCTGGT GGGCTTGGTC
GGTGTGATCG GCGCCATAGA AAGCAACGCC TTTATGTTTA AGGGATTGAG CTACTTCATC
CTGGGGGCGG CCAGTTTCGC CCTCTACCCT ATCGCCATCT CACTGGCCTG CGACAAGCTG
CCGAGCACCA AGATAGTGTC GGCGACCGAG GTGATGTTGC TCTGCTATAG CCTGGGCTCT
GTGGCCGGGC CCCTGCTGGC CTTGAGCCTG AGCGACAAAG GCCACGGCAT GATGATCTAC
CTGGCCATCT GTCTGCTGAG CACCTGCCTC TACATGCTAC TCAAGAGCCT GCAGAAACTT
GACGGTCAGA CAGATCGCCT GCAAAGCTAA
|
|---|
| Protein sequence | MLDVADNCKS NNPTAPVIGL SFFAVASGFL MSLIPLSLGN FGLSPDLAPW LASIFYLGLL
LGALRVERLI AKMGHRRGFV LFLSLLIASI VAMLLLPGAS VWLAARLLAG FTVAGVFVVV
ESWLLMADSV KARARRLGIY MAALYGGSAL GQLAIGELGT QGVLPYLFVI VLLLLAIMAP
VLIRSGEPAH QAQQRLSLKE SANLSRPAII GCLVSGLLLG PIYGLMPVYI DNQVDEPAQT
GLLMAAIILG GMAVQPLISY LSPRMDKRLL MAMCTLVGLV GVIGAIESNA FMFKGLSYFI
LGAASFALYP IAISLACDKL PSTKIVSATE VMLLCYSLGS VAGPLLALSL SDKGHGMMIY
LAICLLSTCL YMLLKSLQKL DGQTDRLQS
|
|---|
| |