Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3267 |
Symbol | |
ID | 4921300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3906111 |
End bp | 3907739 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640164879 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001095392 |
Protein GI | 127514195 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.389403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00603996 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACCCG CCATCCTCAT CATCACCTTA GCCTGTGGCA TGCTTGTCAG TCGTATCGGT TTACCACCAC TCATAGGTTA TCTGGTCGCG GGCTTCGTAT TGTTCCTCTT CGGTATCGAC GAGAGCAGCC TGCCCCTATT GGAACAGCTG GCCGAGCTGG GTGTGACCCT GCTGCTGTTT GCCATCGGCC TCAAGCTGGA TATTCGTAGC CTGTTTAAGG CCGAGGTGTG GGCGGGATCC AGCCTGCATC TGATGGGATC TATCATCTTC CTGGTGCCCC TGCTTAAGCT GCTCGGCCTG CTGGGGCTGG AGCAGCTGAG TGGCCTGGCC TTCAATCAGC TTACCCTGCT GGCCTTCGCG CTGAGCTTCT CCAGCACCAT CTTCGCCGTC AAGGTGCTCG AAGATAAGGG CGACATGCAG TCCCTCTATG GCCGCGTCGC TATCGGTATT CTGATCATGC AGGATATCTT CGCCGTCGCC TTCCTCACCA TATCCAAGGG GGATATCCCC TCCATCTGGG CCCTGGGGCT CCTGCTGCTG CCCTTCGCTA AGCCGCTCAT CTACAAGGCG TTCGACAAGG TCGGTCACGG CGAGCTCTTG GTGCTCTTCG GTCTGGTGAT GGCCCTGGTG GTGGGTGCTG GCCTATTCGA ACTGGTCGGC CTCAAGCCGG ATCTTGGCGC GCTTATCATA GGCATACTGC TGGCGGGTCA CGCCAAGTCG TCTGAGCTGG CCAAGTCGCT CTTCTACTTC AAAGAACTGT TTCTGGTGGC CTTCTTCCTC ACGGTCGGTC TCAACGGCCT GCCGAGCTTC GCCGACATCG GTCTGGCGGC CCTCTTGGTG CTTATCGTCC CAGTGAAGAT AGTGCTCTTC CTCTATCTGC TGACCCACTT CAGGTTGCGT TCGCGCACCT CCTTGATGAC CTCGTTCAAC CTGGGCAACT ACAGCGAATT TGGCCTGATC GTCGCCGCCG TGGCCACCAG CAAGGGCTGG CTACCCGGGC AATGGTTGGT GATCCTAGCA GTAGCCCTCA GCCTCAGCTT TTTGTTTGCC GCGCCGCTTA ACGCCGCCTC GGCTCGCCTG TATCAGAAGT TTCAAAGTCG CTTGCAGAAG CTGGAAAGAC ACCCGCTACA CCCCGAAGAC AGACAGATCC CCGTGGGCAA CCCCCGCTTC CTCATCCTGG GGATGGGACG TATCGGTAGC GGTGCCTACG ACGAGCTGGC CAACCAGTTT GACGGTGAGA TCCTGGGGAT AGAACACAAG CAAGATCTGG TGGACTTCCA TCGCCAACAG GGCCGCAACG TGGTTCAAGG CGATGCCTCG GATACCGACT TCTGGGAGAA GCTGGACAGG GCGCCGAATC TCGAGCTGGT GCTGCTGGCC ATGCCCCACC ACGCGGGTAA CCAGTTTGCG GTGGAGCAAC TAAAACGCTT GGATTATCAG GGCAAGCTCA GCGCGATCGT GCAATACAGC GAGGATGCCC AGTCCCTCAA GGCCGCCGGG GTACACAGCG TGTTCAACCT CTACGAGGCC GCCGGCGCCG GTTTTGTCGA GCATGTGGTT TGCGAGCTCA AGTCCGGCAA GCAGCACGAG GCCGATATCG CCGTCGAGAC TCAGGAGATC ACAGGCTAG
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Protein sequence | MEPAILIITL ACGMLVSRIG LPPLIGYLVA GFVLFLFGID ESSLPLLEQL AELGVTLLLF AIGLKLDIRS LFKAEVWAGS SLHLMGSIIF LVPLLKLLGL LGLEQLSGLA FNQLTLLAFA LSFSSTIFAV KVLEDKGDMQ SLYGRVAIGI LIMQDIFAVA FLTISKGDIP SIWALGLLLL PFAKPLIYKA FDKVGHGELL VLFGLVMALV VGAGLFELVG LKPDLGALII GILLAGHAKS SELAKSLFYF KELFLVAFFL TVGLNGLPSF ADIGLAALLV LIVPVKIVLF LYLLTHFRLR SRTSLMTSFN LGNYSEFGLI VAAVATSKGW LPGQWLVILA VALSLSFLFA APLNAASARL YQKFQSRLQK LERHPLHPED RQIPVGNPRF LILGMGRIGS GAYDELANQF DGEILGIEHK QDLVDFHRQQ GRNVVQGDAS DTDFWEKLDR APNLELVLLA MPHHAGNQFA VEQLKRLDYQ GKLSAIVQYS EDAQSLKAAG VHSVFNLYEA AGAGFVEHVV CELKSGKQHE ADIAVETQEI TG
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