| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3141 |
|---|
| Symbol | |
|---|
| ID | 4922008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3734703 |
|---|
| End bp | 3735644 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164751 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001095266 |
|---|
| Protein GI | 127514069 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAG AGCCATATGC TTTAGTTATC GACTCGCTCA GAAAAACCTA CAAGGGCGGT
GTCGAAGCGG TAAAAGGGAT CAGCCTTAAG GTCGAGGCGG GGGATTTCTT TGCCCTGCTG
GGCCCCAACG GCGCCGGCAA GTCCACCACG ATCGGGGTGA TCTGCTCCCT GGTGCAGAAG
AGTTCCGGCA AGGTGAAGGT GTTCGAACAC GATATCGACA CCCAGCTGGA GCTGGCCAAG
ATGTCCATCG GCCTGGTGCC CCAGGAGTTT AACTTCAACC AGTTTGAGAC TGTGCAGCAG
ATAGTGGTCA ATCAGGCCGG CTATTTCGGC GTCTCCCGCG AGGTGGCTTT CGAGCGCGCC
AAGAAGTACC TGAGTCAGCT GGACCTGTGG GACAAGCGTA ACAGCCCGTC ACGGGCCCTC
TCGGGCGGCA TGAAGCGCCG CCTGATGATC GCCCGCGCCC TGATGCACGA GCCCAAGCTG
CTGATTCTGG ATGAGCCCAC CGCCGGGGTG GATATCGAGC TCAGACGCTC CATGTGGACC
TTCTTGACGG ATCTTAACCG CCAGGGGGTG ACCATCATCT TGACCACCCA CTACTTGGAA
GAGGCCGAGA TGCTGTGCCG CAACATAGGC ATCATAGACA AGGGCGAGCT GGTGGAGTGC
ACCAGCATGA AGTCCCTGCT CAGCCGCCTT AACATGGAGA CCTTCGTGTT CGACCTCAAG
GCCGACATCA ACGAGGCGCC GACCCTCGAG GGGATCAGCT GTCGCCTGAC CGACCCACAC
ACATTAGAGG TGGATGTGGA GAAGGCCCAT AGCATCAACA GCGTGTTCGC CCAGCTCACC
GAGCAGGGGA TAGAGGTGTT GTCTATGCGT AATAAGGCTA ACCGATTGGA GGAGCTGTTT
GTGGAGCTGG TGGAGCAAGG TAAGGGAGGC AGCAAAGTAT GA
|
|---|
| Protein sequence | MTKEPYALVI DSLRKTYKGG VEAVKGISLK VEAGDFFALL GPNGAGKSTT IGVICSLVQK
SSGKVKVFEH DIDTQLELAK MSIGLVPQEF NFNQFETVQQ IVVNQAGYFG VSREVAFERA
KKYLSQLDLW DKRNSPSRAL SGGMKRRLMI ARALMHEPKL LILDEPTAGV DIELRRSMWT
FLTDLNRQGV TIILTTHYLE EAEMLCRNIG IIDKGELVEC TSMKSLLSRL NMETFVFDLK
ADINEAPTLE GISCRLTDPH TLEVDVEKAH SINSVFAQLT EQGIEVLSMR NKANRLEELF
VELVEQGKGG SKV
|
|---|
| |