| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3134 |
|---|
| Symbol | panC |
|---|
| ID | 4922001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3725808 |
|---|
| End bp | 3726656 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164744 |
|---|
| Product | pantoate--beta-alanine ligase |
|---|
| Protein accession | YP_001095259 |
|---|
| Protein GI | 127514062 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0414] Panthothenate synthetase |
|---|
| TIGRFAM ID | [TIGR00018] pantoate--beta-alanine ligase
[TIGR00125] cytidyltransferase-related domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.504396 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.398811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACACCA CCCAAGATAT CGCCGCGATC CGCACCCAGG TGCGTCAGTG GAAACGAGCC
GGCGAGACAG TGGCATTCGT GCCCACCATG GGCAATCTAC ACCAGGGGCA TATCACCCTG
GTCACCGAGG CGCTTAAACG CGCCGATCAC GTGGTGGTCT CCATCTTCGT AAACCCTATG
CAGTTTGGAC AGAACGAAGA TCTGGATGCC TACCCCCGCA CCCTGGCCGC CGATCAGGCC
GCCCTCGAGG CCGCCGGTGC CGAGCTGTTG TTTACCCCGA CACCGGCCAT CATCTATCCC
AAGGGGATGG ATAAGCAGAC CTTTGTCGAG GTGCCTGGCC TGTCTGAAGA GCTCTGCGGC
GCCAGCCGTC CTGGGCACTT TCGCGGCGTC GCCACCATAG TCTGCAAGCT GTTCAATATC
GTACAGCCGG ATGTGGCTCT GTTCGGCAAG AAAGATTTTC AGCAGCTGAT GGTGATCAAG
GCCATGGTGG AAGATCTGTC TCTGCCTATC GAGATCGTCG GTGTCGATAC CATACGTGAG
AGCTCTGGCC TAGCCATGAG TTCACGCAAT GGCTACCTGA GCGAGGCGCA GAAGCAACAG
GCCGCTCAGC TTAAGCGCAC CCTGGATGAG ATGGCCGAGG CAATCGCCAA GGGTCAAGCA
ATCCCTAATG TAGTGCGGCA CGCTCAGGAA CAGTTGCACC AGGCTGGGTT TAAGCCAGAT
TATCTGTCGG TGCGTAACGC CGCCGATCTG CGTGAAGCCC AGGACAGCGA TAAACAGCTG
GTGATCCTGG CCGCCGCCTT TATGGGCAGC ACCCGCCTGA TCGATAACCT GAGTTTCGAA
CGCGCTTAA
|
|---|
| Protein sequence | MYTTQDIAAI RTQVRQWKRA GETVAFVPTM GNLHQGHITL VTEALKRADH VVVSIFVNPM
QFGQNEDLDA YPRTLAADQA ALEAAGAELL FTPTPAIIYP KGMDKQTFVE VPGLSEELCG
ASRPGHFRGV ATIVCKLFNI VQPDVALFGK KDFQQLMVIK AMVEDLSLPI EIVGVDTIRE
SSGLAMSSRN GYLSEAQKQQ AAQLKRTLDE MAEAIAKGQA IPNVVRHAQE QLHQAGFKPD
YLSVRNAADL REAQDSDKQL VILAAAFMGS TRLIDNLSFE RA
|
|---|
| |