| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2994 |
|---|
| Symbol | |
|---|
| ID | 4923795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3554374 |
|---|
| End bp | 3554748 |
|---|
| Gene Length | 375 bp |
|---|
| Protein Length | 124 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164604 |
|---|
| Product | CopY family transcriptional regulator |
|---|
| Protein accession | YP_001095119 |
|---|
| Protein GI | 127513922 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3682] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA TTAGCAACGC CGAACTGTCG GTACTCAACA TCCTATGGCA AGACTCGCCC
CTCGGCGCCA GCGAGGTGGT AGAGGCGCTG ACCAGCAGCA AGGACATGCA CGAAAAAACC
GTGAAGACAC TGCTCAACCG CCTGGTGAAG AAACAGGCCC TGGGCTTTGA GAAGCAAGGT
AGAGCCTATC GCTACTTCCC GCTGATCGAT CAGAGCGAGT ATCAACTCAA GGAGAGCCAG
TCTTTCGTGG AGCGGGTATT CGCCGGTAAG GTCGCTCCCC TGGTGGCAGG CTTTGCCAAG
CAGAAACAGC TCAGCCCAGA GGATATCGCC GAACTTAAGG CACTCATCGA TAACTGGGAA
GAGGAGCAGT CCTGA
|
|---|
| Protein sequence | MKEISNAELS VLNILWQDSP LGASEVVEAL TSSKDMHEKT VKTLLNRLVK KQALGFEKQG
RAYRYFPLID QSEYQLKESQ SFVERVFAGK VAPLVAGFAK QKQLSPEDIA ELKALIDNWE
EEQS
|
|---|
| |