Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2990 |
Symbol | |
ID | 4923791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3548977 |
End bp | 3550947 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164600 |
Product | TonB-dependent receptor |
Protein accession | YP_001095115 |
Protein GI | 127513918 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.235083 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTACAC AACCTAGTAA AATTGCGCTA CTGCTTGGCG CCTGTCTGGC CGGAAGCTTT CCTGCCTTAG CGGAAAGTTC GGGCACCCCA GGGCCTGTGG ATGAAACTAT CACGGTTATC GGCCGCACCG AAAACACCCC TATCAATATC GCGGCTAACG TCAATGTGAT CGACGCCGCC GCCATCGAAC TCAGCGGTGC CACCAACCTC ACCGAGCTGC TGCGCGGACA GAGCGGCATT CAGGTGTCAG ATTCAAACTC GGGTGCCGTG TTTGCCATGC GCGGTTTCAG TGCCAGTCAG GCGGTCAACA ACACCTTGAT CCTGATCGAC GGTCGTCGTC TCAACAACAT CGATATCGCC GCGCCGAGCA TTAGCGCCAT CGGGCTCAAT CAGGTGGAGC GAATCGAGAT CCTCTCAGGC AGCGCCGGTG TGCTCTATGG TGACCAGGCG GTTGGCGGGG TGATCAACAT TATCACCAAG GCGCCGAAAG ATAACGGCGG CAGCCTGCAG CTCTCCGGCG GCAGCTTCGA CACCTTTGAG GCCAAGGCCG AGGGCTCGGT CGCCATCAAC GACAACTGGC GCCTCTATGG CGCGGCCAAC CACCTCAAGA GCGATAACTA TCGCGATCAC AATGCCAGCA AGACCAGCTC AGTGCTGGGA CGCCTGCAGT ATGACGATGA AGTGCAGCAG TTCTTGGCCG AGGCGAGTCA CTATGACAAC CACCGCGAAC TGGCTGCTGC GCTGAATGAC GATCAGCTCA AGCAAAACCC AAGACAGATG GGTGATCTGA AGCAAGGCGA TCTCTTTATC GATGCCTACC TGCATGAGAT GACCACGGCG GCCCGCACCG GCTATCAGCG ACAGCTGAAT GAGGCCTGGG CACTGGGCGC CGACCTTAAC TACAGCGACA CTCTGACAAC CGGGCTAAGC ACCTGGAACA CAAGCCGCCG CGATACCCGC TCCCTGCTGG AGTTTAAGCC CAAGGCTGTG GCTAACATCA AGACGGATAT CGGCGAGCTT AAGCTGGTGA CCGGTCTGGA TCTCAGCCGC GGCGAGGCGA CATTTAGCAA TCGCAGCAAT GTGCAGAAGT TGGCCAGCGC CTATCTGCAG GCGACCGTGC CCCTCACCGA GAGCTTCAGC TATGTGGTGG GCGGTCGTTA CGCCGAGGTG ACGGATGAAC TGGTGGACGC CAGTGCCTAC CCTAATGGGA TCGATCTGGA TCAGGATGCC CATGCATTCG AGCTTGGCCT TAACTATCGC CCGAGCCAGC AACATAGATT CTACCTGCGC GCCGACGATA ACTTCCGTTT CGCCAAGGTG GATGAGCAGG CTTATACGCC AGAGAGCATT CAGGGACTTA AGCCGCAGAC GGGTCGCTCC TACGAGGCGG GCTGGGATCT GCTGCTCGAG CGCAATACCC TGCGCCTGAG CGCCTATCGA CTGGATCTCG AAGATGAGAT CGTCTTCGAT CCAAGCGCCG AGACACCTGC CGGTGGTAGT TTTCCCGGCG CCAACGTGAA CGCCGATGCC TCGCGCCGTT ATGGGGTGAG CGCAGACTGG GATTGGCAGG CGACTCAGGA TCTACTGCTT GGGCTTGAAT ATAACTACAT AGACGCCGAG TTTACCGAAG GGGCTAACGA GGGTAAGGCG CTCTCCTGGG TGGCCAAGAA CACAGGTCGT GGCTATGTCA GTTACGATGT TTATGAACAT CTGCAGCTCT TCGCCGAGGC GGTCTACACC GGTGAGCGTT ACATGGAGGG TGACAATGCC AACCAGGGCG ATAAGCTCGA TGCCTATACC CTTGCAAATA TCGCCATCAA CTATTCCCGC GATGCCTGGC TGGCCAGCCT GCGGGTCGAT AACCTGCTGG ACAAGGAGTA TGTCAGCTCT GGGTATTTCA GCACCTGGGG TAGCGGTTAT TATCCTGGTA CGGGCCGGGC GCTGCGCCTG ACTGCCAGCT ACCGCTTCTA A
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Protein sequence | MGTQPSKIAL LLGACLAGSF PALAESSGTP GPVDETITVI GRTENTPINI AANVNVIDAA AIELSGATNL TELLRGQSGI QVSDSNSGAV FAMRGFSASQ AVNNTLILID GRRLNNIDIA APSISAIGLN QVERIEILSG SAGVLYGDQA VGGVINIITK APKDNGGSLQ LSGGSFDTFE AKAEGSVAIN DNWRLYGAAN HLKSDNYRDH NASKTSSVLG RLQYDDEVQQ FLAEASHYDN HRELAAALND DQLKQNPRQM GDLKQGDLFI DAYLHEMTTA ARTGYQRQLN EAWALGADLN YSDTLTTGLS TWNTSRRDTR SLLEFKPKAV ANIKTDIGEL KLVTGLDLSR GEATFSNRSN VQKLASAYLQ ATVPLTESFS YVVGGRYAEV TDELVDASAY PNGIDLDQDA HAFELGLNYR PSQQHRFYLR ADDNFRFAKV DEQAYTPESI QGLKPQTGRS YEAGWDLLLE RNTLRLSAYR LDLEDEIVFD PSAETPAGGS FPGANVNADA SRRYGVSADW DWQATQDLLL GLEYNYIDAE FTEGANEGKA LSWVAKNTGR GYVSYDVYEH LQLFAEAVYT GERYMEGDNA NQGDKLDAYT LANIAINYSR DAWLASLRVD NLLDKEYVSS GYFSTWGSGY YPGTGRALRL TASYRF
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