| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2863 |
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| Symbol | |
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| ID | 4922242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3394524 |
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| End bp | 3395270 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640164460 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001094988 |
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| Protein GI | 127513791 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTCGA ATTTTGAAGG TAAGGTGGTG CTCATCACGG GCGCCGCCAG CGGTTTTGGC
AAGCTCTTGG CCCAGCGTTT GGCCCCTCAG GGCGCCAAGC TGGTGCTGGG CGATATTAAC
GACACGGCGC TCGACGCCCT GTGCAGCGAG TTGGGCGAAT GCGCGGTCGG TCTGCGCTGT
GATGTCAGCA TAGAGGCCGA ACAGCTGGCC CTGGCTCAGC TGGCCGAAGA GAGCTTTGGC
CGTCTGGATA TCGCCATCAA CAATGCCGGT ATCTCGGCCC CCATGAAGAG CCTGCTAGCG
ACCACAGAGG CCGACATGGA CCTTAGCTTC GCCATCAATA CCAAGGGGGT GTTCTTCGGC
ATGAAGGCGC AGATCCCTCT GATGCAGAAA CATAAATGTG GGGCGATTCT AAATGTTGCC
TCCATGGCCG GCATTAACGG CGCCCCCAAG CTGACCCCTT ATGTGGCCGC CAAGCATGCC
GTGGTCGGCA TTACCCGCAC CGCGGCGCTG GAGTTTGCCG CCCAGGGGAT CCAGGTCAAC
GCCATCTGCC CCTTCTTCAC CCCAACGCCT ATGGTGACCG AGGGGGTCGA TCCCGCGCTA
ATCGAGCAGC TGACCCGCGC CGTGCCCATG CGCCGCCTGG CCGATCCAAA CGAGGTGGTC
AGCGCCATGC TGCACATGGT CAACCCGGAC AACGGCTTTA TGACCGGCCA GGCCATTGCC
ATCGATGGTG GCGTCTCTGC CATCTGA
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| Protein sequence | MQSNFEGKVV LITGAASGFG KLLAQRLAPQ GAKLVLGDIN DTALDALCSE LGECAVGLRC
DVSIEAEQLA LAQLAEESFG RLDIAINNAG ISAPMKSLLA TTEADMDLSF AINTKGVFFG
MKAQIPLMQK HKCGAILNVA SMAGINGAPK LTPYVAAKHA VVGITRTAAL EFAAQGIQVN
AICPFFTPTP MVTEGVDPAL IEQLTRAVPM RRLADPNEVV SAMLHMVNPD NGFMTGQAIA
IDGGVSAI
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