| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2735 |
|---|
| Symbol | |
|---|
| ID | 4922931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3232509 |
|---|
| End bp | 3233423 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164330 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001094860 |
|---|
| Protein GI | 127513663 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4667] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0568052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000690966 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGATT CACCCTTGCC AGACTCTGAA ACGTCAGCAG CGGCCGAGTT CAAGGTGGAT
AATTGCGCCT TGGTACTCGA AGGTGGTGGC CTGCGCGCCA TCTATACTGC GGGCGTGCTC
GATGCCTTCT TGGCCGCGGG GATCCATTTT CAGTATCTGG TGGGGGTATC CGCCGGCGCC
ATCTATCCTG CCTCCTATCT GTCGCGTCAG ATGGGGCGTA ACCTCACCAT CCAACAAAAT
TTTCTTGCCG ACAAGCGCTA CATGGGGCTC AAGCACCTGC TGCGCACCGG TAACTATGTC
AACACTGACT TTACCTACCG CCGCATGGCC CACGAGCTGG TGCCCTATGA TTTCGACGCC
TTCGCCAGTA GCGAGGCCGA GTTCAAGGTG GGCGCCTTTA ACTGCCTGAC CGGTGAGACC
GACTTCTTCG GTATGGCGGA CTTTGCCGAT CACGACACCT TTCTCGAGGT GCTTATCGCC
TCCAGCAGCC TGCCGTTTAT CTCAAAACCT ACCTTCATCG ACGGCACGCC CTATCTCGAT
GGCGGCATAG GGGCGCCGAT CCCGCTGGCA CAGGCCCGTG AAGATGGCTA CAAGCGCCAG
GTGGTGATTC TGACCCAGGA GCAGGACTAT CGTAAATCGG CCTTCAAGGC CAAATGGTTG
GCGAAGCGTC TCTATCGCCG CTATCCCAAG GTGGCCAGTG CCTTGCTCGC CCGCCATCAA
GTCTACAATC AGGCGCTCGA TGATTTGACC AAGGCCCAGG CCGATGGCAG TGCCCTAGTG
CTGCAGCCCG CCACGCCGCT GGGGCTGTCG CGTCTGGAGC GGGACGTGAG TAAGGTCGAG
GCCGTCTACC GCCGTGGCCT CAGCGAGGGT GAAGCCTTTA TTCCAAGCCT GTTGGCCTTT
ATCGAAAACT GCTAA
|
|---|
| Protein sequence | MSDSPLPDSE TSAAAEFKVD NCALVLEGGG LRAIYTAGVL DAFLAAGIHF QYLVGVSAGA
IYPASYLSRQ MGRNLTIQQN FLADKRYMGL KHLLRTGNYV NTDFTYRRMA HELVPYDFDA
FASSEAEFKV GAFNCLTGET DFFGMADFAD HDTFLEVLIA SSSLPFISKP TFIDGTPYLD
GGIGAPIPLA QAREDGYKRQ VVILTQEQDY RKSAFKAKWL AKRLYRRYPK VASALLARHQ
VYNQALDDLT KAQADGSALV LQPATPLGLS RLERDVSKVE AVYRRGLSEG EAFIPSLLAF
IENC
|
|---|
| |