Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2718 |
Symbol | |
ID | 4922948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3216809 |
End bp | 3219220 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640164313 |
Product | TonB-dependent receptor |
Protein accession | YP_001094843 |
Protein GI | 127513646 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000743296 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGCTTAG CTGTTTCCGC ATTAGCAGTG TCATCTGCAC TCATCCTTCC TGGCGTCCAC GCTGAAGATC AACAAGCGAC CTTAGATCAA CAAGCCAGCT TCGAAAAAAT CGAGATCATA GGTTCACGTA TCGCACTACG TACTGCCACA GACAGCGTGG CACCGGTGGA CATTATTACC GCAGAGCAGC TCGAATCGAC GGGGATGACA GAAACGGCTA AGGCACTGCA ATTTGCCGCA CCCAGCTACA GCTTTCCATT CTCATCGGTA ACCGATGGCT CAGATGCGGT GCGCCCGGCG AGCCTGCGCG GCCTATCGCC GGATCACACC TTAGTCTTGG TCAACGGCAA GCGTCGTCAC GGCTCGGCAC TGGTCCATCT GAGTGGCACA GTAGGTAAAG GCTCATCTAA CGTCGACCTG AACGCCATTC CGATGACGGC AATCAAGCGT ATCGAGATCC TGCGTGACGG TGCGTCGGCG CAATATGGCT CCGATGCGAT TGCCGGCGTC ATCAACGTGG TGCTAAAAGA CAATGAGCAA GGTGGTAGCC TATCCGCACA AGCTGGCCAA ACCTACGCGG GTGACGGCGA ACAGTGGCGC TTGGGTGCCA ACCATGGCAT CGCCCTGGGT GACGATGGCT TCGTTAATGT CTCACTCGAG GCACACCATA AAGACAGCAC TAACCGCGCT GGGCTAGATC CTCGCCAGCA GTATCCGCAG TTAGCCGATG GCTCACCGGA TCCTCGCGAA GCCACCTTTA ATCGCAAGAG CCATCAAGTT GGCGACGCCG AATACGACAA CCTAGGCCTG TTCATCAACG CCGCCAAGGC CATCTCAGAC AACGGCGAGC TATACGCTTT CGGTGGCGTG AGCAAACGCG AAACTAAATC AGGCGCCTTC TACCGCAGAG CCCTGGATAA GCGTAACTTA ACCGAAGTTT ATCCCGACGG TTTCTTACCC CAGATCAACC CTGAAATAAT CGACACCTCG TTAGTGCTAG GTTATGAGTT CACCCTGGGT GAATGGAATA TCGATACCTC CGCAGGCCAT GGCGAAAACT CATTTAACTA CAACATTGTT AACTCATTAA ACGCATCTAT GGGCCCCGAT AGCCCGACCG AATTTGATGC CGGCACCTTG TCGACCCGTG AAACCAACTT GAATATCGAT GCGTCGCGCT ATTTTAACTT TGCAAACGAC TCAGAGATCC TCTTTGCCGC GGGTGTATCA TGGCGCAAGA ATGGCTACCA AATTGAAGCG GGCGAGAGTG CTTCCTACAT CAATGGCGGT TTCGATAATC GCGCCGCCGG CAGCCAGGGC TTCTCGGGCT TTACCCCAGA ATCTGAAGTC GACGAGACCC GAGATAACAC AGGCGTTTAT GTCGAGCTTG AAAACCAGTT AACCGATGAC TTTTACTGGG CGGCGGCGCT GCGTTACGAA AATTATTCAG ACTTCGGCGA CAACACCAGC TGGAAGCTAG CGGGCCGCTA TGACTTTACC GACAACCTGG CCCTGCGCGG TACCATCAAC ACAGGCTTTA GAGCGCCAAG CGTGCAGCAG CTGTACTTCA GCAACATCTC TACCCTGTTT AACCCTGATC CTGTCACGGG TCAGTTGGTA CCGACAGAAT CGGGCACCTT CAACACCCTG TCACCCGTAA CAAAAGGGCT AGGGATCAAT GAACTAGAGC CAGAGTTATC ACAGTCTTTC AGTCTAGGTC TGGTCTATCG CAATGATGCG GGCCTGGCAC TGACCTTGGA CGCCTATCAG ATCTCTATCG ATGACCGAAT CATCTTGTCG AGCTCAGTCA CGCCGGATGA TTCACCTGCG GTCGCTGAGG CCCTTGCCGG CACCAACGCC GAATCGGCAC GCTTCTTCAT CAACGCCGTC GATACCCGTA CCCGAGGGGT TGATCTGGTG ATAAGCCAGG ATTTTGATAT CGGCGCTTGG GGCGATCTGC AAGCCAACCT GGCCTATGCC TATAACAAAA CGGAAATTCA AGACATTCAT TTCCCGCAGG TGTTAGACGG CGTAGGTAAA GAGCTCTTCG ATCGTATCGA ACAAACTCGT ATGACCGCGG CCACGCCAAA CAACACAGGC AACCTGGGAC TCACCCATAG GCTAGGTGAT TTCAAGACCA ACGTTCGTCT AAGCTACTTT GGCGATTACA CAGTGGGTTA TTCCTCAGGC GATGTCACTT ACAGCGACCA ATGGGTAATG GATATGTCGG TGCAATACGC GGCAACTGAG GCGCTAAGCT TTACTGCCGG GGCGCAAAAC CTGTTCGATG TCTACCCGGA GAAGCGTCCG GACAGCAATA ACTTCAATGG CATCTTCGTC TATCCATTAA CCAATACGCC ATTTGGCTTT AATGGTGGTT ACGTCTTCTT AGAAGCCAAA TATACCTACT AA
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Protein sequence | MRLAVSALAV SSALILPGVH AEDQQATLDQ QASFEKIEII GSRIALRTAT DSVAPVDIIT AEQLESTGMT ETAKALQFAA PSYSFPFSSV TDGSDAVRPA SLRGLSPDHT LVLVNGKRRH GSALVHLSGT VGKGSSNVDL NAIPMTAIKR IEILRDGASA QYGSDAIAGV INVVLKDNEQ GGSLSAQAGQ TYAGDGEQWR LGANHGIALG DDGFVNVSLE AHHKDSTNRA GLDPRQQYPQ LADGSPDPRE ATFNRKSHQV GDAEYDNLGL FINAAKAISD NGELYAFGGV SKRETKSGAF YRRALDKRNL TEVYPDGFLP QINPEIIDTS LVLGYEFTLG EWNIDTSAGH GENSFNYNIV NSLNASMGPD SPTEFDAGTL STRETNLNID ASRYFNFAND SEILFAAGVS WRKNGYQIEA GESASYINGG FDNRAAGSQG FSGFTPESEV DETRDNTGVY VELENQLTDD FYWAAALRYE NYSDFGDNTS WKLAGRYDFT DNLALRGTIN TGFRAPSVQQ LYFSNISTLF NPDPVTGQLV PTESGTFNTL SPVTKGLGIN ELEPELSQSF SLGLVYRNDA GLALTLDAYQ ISIDDRIILS SSVTPDDSPA VAEALAGTNA ESARFFINAV DTRTRGVDLV ISQDFDIGAW GDLQANLAYA YNKTEIQDIH FPQVLDGVGK ELFDRIEQTR MTAATPNNTG NLGLTHRLGD FKTNVRLSYF GDYTVGYSSG DVTYSDQWVM DMSVQYAATE ALSFTAGAQN LFDVYPEKRP DSNNFNGIFV YPLTNTPFGF NGGYVFLEAK YTY
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