Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2643 |
Symbol | |
ID | 4924121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3118781 |
End bp | 3119602 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164238 |
Product | pseudouridylate synthase |
Protein accession | YP_001094768 |
Protein GI | 127513571 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.998826 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACC TTAACGAGCA GCTAGCTGGC GACGATGACA GCCTTGCCGT AGAAGCGGCA CCGACAATCG AGATCCTCTA TGAAGATGAC GATCTTGTCG CCATCCACAA ACCTGCCGGT CTGCTGGTGC ATCGCAGCTA CCTTGCGCGG CGGGAAAAAT ATTTCGCCAT GCAGATGACG CGGGATCTGG TGGGCTGCCA TGTGTTTCCC GTCCATCGTC TCGACAGGCC GACCTCGGGT GTGCTGCTGT TTGCCAAGAG CAGTGAGATG GCGAATCAGT TGTGTGAGCA GTTCGCCAGC AAGTCGGTGC AAAAGCATTA TGTTGCCCTA GTCAGGGGGA ACATGCACGA GCCTGGGCTG CTGGACTACC CTTTGAAGCA GGAGCTTGAC GAGCTGGGTG ATAAGAATGT CGACCCTAAC AAGGCGGCGC AGGAGGCGCA GACCAGTTAT CACCCCTTGC TCAACTGTGA GATCCCTTAT CCTTCTGGCC GCTATGCCAG CAGTCGCTAT GCCTTGGTTC AGCTAACTCC CCATACGGGG CGCAAGCATC AGCTGCGTCG GCATATGGCC CATCTGCGTC ATCCCATCAT TGGTGATACC ACCCATGGTG ACGGCAAGCA GAACCGTTTC ATGCGCGAGC ATAGTGGCAT CAATCGTTTG TGGCTGATCG CCAAGAAACT TGAGTTCAAT CATCCACGAA GCGGCGAGCG AATAGCGGTG GAGACAGAGC TAGAGGCCGA GTGGCTGTCG CTGTTTGAAC TGCTCGGCTG GGATGACCAG CAGCTGAGTG GCGAACAAGC GCTACTTATC TGTGAGGCTT AA
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Protein sequence | MENLNEQLAG DDDSLAVEAA PTIEILYEDD DLVAIHKPAG LLVHRSYLAR REKYFAMQMT RDLVGCHVFP VHRLDRPTSG VLLFAKSSEM ANQLCEQFAS KSVQKHYVAL VRGNMHEPGL LDYPLKQELD ELGDKNVDPN KAAQEAQTSY HPLLNCEIPY PSGRYASSRY ALVQLTPHTG RKHQLRRHMA HLRHPIIGDT THGDGKQNRF MREHSGINRL WLIAKKLEFN HPRSGERIAV ETELEAEWLS LFELLGWDDQ QLSGEQALLI CEA
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