| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2484 |
|---|
| Symbol | |
|---|
| ID | 4921379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2924480 |
|---|
| End bp | 2925253 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640164074 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001094609 |
|---|
| Protein GI | 127513412 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00565244 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGATCTAT TACTCGACCC AGGTAGCTGG GCGATTCTGG CTGCGACCGG CTTTATCGCA
GGTTTTATCG ATGCCATCGC CGGTGGCGGT GGCCTGCTGT CGATCCCGGC CCTGCTCACC
ATAGGCATTC CACCCCATAC GGCGCTGGGC ACTAACAAGT TGGCGGCCAG CTTCGGCTCC
TCCATGGCGG CCTTCACCTA CTATCGCAAG CAGTTTTTCA CCCCCAGATT TTGGTATCAC
GCCTCCATTG CCACCTTTAT CGGCGCTGTC ATAGGCACCT TTGTGGTCTA CCTCATCGAC
AATCAATGGC TCGAGAAGTG GCTACCGCTG TTTATCATCG CCGTGGCCCT CTATACGCTA
CTAAAACCCA ATGCCATGGG CTGCCCCACC TATGAGCCGC CGGTAAAGGC GCCCTCTAAA
TTTAAGCAGT GGCGCCAAGG GATACCGCTT GGCTTCTACG ACGGATTTGC CGGCCCGGCG
ACCGGCGCCT TTTGGACCAT CAGCAGTGTG TCTCAATATA AGCTGCCTGT ACTCAATAGC
TGTGGCCTTG CCAGAGCCAT GACGCTGATC AGCAACCTCA CCTCACTGAG TGTGTTTCTG
GCATTAGGCC AGGTAAATCT GATGGTCGGA CTGTCGATGG GGCTGTGTAT GATGCTTGGC
TCATTCATCG GCGCCCGCAC CGCCATCAAA TTTGGCGTGC CTTTTATTCG CCCCCTGTTT
ATTAGCATAG TGATACTCAT CGCCATTAAT CTGGCCTGGG GAGCCTGGGC ATGA
|
|---|
| Protein sequence | MDLLLDPGSW AILAATGFIA GFIDAIAGGG GLLSIPALLT IGIPPHTALG TNKLAASFGS
SMAAFTYYRK QFFTPRFWYH ASIATFIGAV IGTFVVYLID NQWLEKWLPL FIIAVALYTL
LKPNAMGCPT YEPPVKAPSK FKQWRQGIPL GFYDGFAGPA TGAFWTISSV SQYKLPVLNS
CGLARAMTLI SNLTSLSVFL ALGQVNLMVG LSMGLCMMLG SFIGARTAIK FGVPFIRPLF
ISIVILIAIN LAWGAWA
|
|---|
| |