| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2401 |
|---|
| Symbol | |
|---|
| ID | 4921791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2815269 |
|---|
| End bp | 2817719 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640163991 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001094526 |
|---|
| Protein GI | 127513329 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.678425 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCTC GCATCGCATG GAAGTTGTTT AAACGAGAGC TGCTGCAGGG ACAGCTGTTA
CTCATCATAT TGGCGATCAC CCTGGCGGTC TTTTCGGTAT CTGGCCTTGC GCGGGTGAGC
GAGCGCCTGC AGCTGGCCAT TAATGGCCAG GCCTCTAAGT TTATCGCCGC CGATCGCATC
ATCAATTCGC CGGTTCCGCT GGATGACAAG ATCTTAGCCA AGGCCGATGC GCTGGGGCTC
AGACACGTTG CCAGCATGCA GTTTAACTCC ATGGCTTATG CAGGTGATGC CTTTCAGTTG
GTGACGGTAA AGGCGGTTGG CGAAGGTTAC CCCTTAAAAG GCGTGATAGA GCTGAGCGAT
GGCCCGACCG ATAAGCTGCC CAAGGCGGAC CAGCTCTGGT ACGAGACCCG CCTGGGGGGG
ATCTTGGGTT ATCCCAAGCA GCTCGAGCTA GGTAATGCCA ACTTCAGCCT GAGCGCCGAG
ATAGCCAGGC TGCCCGATGC GGGCTTTAAT CCCTTCGCTT CATCGCCCGT GGTGCTGATG
CGACTTCAAG ATGTGCCCAA GACTGGGGTG ATTCAACCTG GCAGCCGGGT GAGTTATATC
CATCAGTTCG CTGGAGAGGC TGACCAGCTC AAGGCCTTCG AGGCCGAAGT TAAGCCGCTG
CTTAACAACA GTCAGCGCTG GGTCGATGTG CAGTCGGGGG ATTCGCCCAT CGCTGGTGCG
GTCAAACGGG CCGAGCGCTT CTTGCTGCTC GCCAGCCTGC TGGGGATAGC GCTTGCCTGC
GCCGCCATAG GGATCGCCGC CCAGCGCTAC TGTCAGCGCC ATTTCGACGT GGTGGCCATG
CTCAAGACCT TCGGCGCTTC CAGCCGTCAG ATCCGTATTC TCTTTGGCCT GCATCTGCTG
TTGGTCACCC TTGCGGGTAT CGCATTGGGG CTCATCGGCG GTTTCCTGCT TGATACGTTG
ATCAGCGCCT ATCTGCCAGC CTCGATCTCG GCGTACTCGC CGCCGCTGTT TAGGCCTATC
GCCTTAGGGG TCGCCACTGG GCTTATCTCG GCCTTCATGT TCTCGGCCTA TCCGCTGATG
AGACTGCTGG CCATTCCGCC CCTTAGGGTG TTGCAGCGCC AGCTAGAAGG AATTCAGCTG
GGGATGTGGC TGCACCTGGT GCTTAGTCTA TCGGCGATGG CACTGCTGGG GTATCTTTAC
TCACAGAGTC TGGTGCTCAC CCTAACCGTG GTTGCTGCCG TGATGTTGCT CGGTGTCTTG
CTGAGTCTGT TTGGTTTCTT GTTGATCCGC GCCGGTCACA GCGTAGGCAT GAAGACCACC
AACCCTATGC AGCTGGCCTT GGCGGGGCTC AGACGCCGCG CCAGGCAAAA TGCGGTGCAG
CTTGTGGGCT TTAGCAGCGC CCTGGTGTTG CTGCTGACCA TCATAGCGCT TAGGCAAGAC
CTGCTCGATG AGTGGCATAA ACAGCTGCCC GAACAGTCGC CCAACTACTT CCTGGTCAAC
ATAGCGCCCG AGGAGCAGGC GCCGCTGGAG GCCTATTTTA GCGACAACCG CGTCAAGGCG
ACCGATATCT ATCCAGTGAT CCGTGGCCGT CTGGTGGCGA TCAATGGCGA GAAGCTGATC
TCTGCCGAGC AGGCAGATGA GGGGGCCCAA GGCCGAGTAG GGATTTCCCG CGAGCTGAAT
CTGACCTGGC GTACCTCTCT GCCACCCAAT AACGAGCTGC TATCGGGTCA CTTTAACCAA
AAGGCCGATG AGGTGTCGGT GGAGTCCGGC GTGGCCGAGC GTCTCGGCAT AGGCTTGGGG
GATGAGCTCA GTTATGTGAT CGACAATCAG CCGCTAACGG TGAAAGTTGC CAGCATTCGC
GCCGTACACT GGGAGACGAT GCAGCCTAAC TTCTTCATGA TCTTCCACCC CGACGCCCTG
GCGCCCTTTG CCTATACCTC TATGGCCAGC TTCTATCTGG ACGATAGCAA GCGACCTATG
GTGATCGAGT TGATCAAACG CTTCCCCACG GTATCCATCA TAGATGTCGG CGCCATGGTG
AAGCAGCTTA GGCAGATCAT CGATCAGGTC TCCCTGTCGC TGACCCTGGT GCTGGTACTG
GTCCTGCTGG CCAGCAGCCT GGTGATGATA GCGCAGACCG AGGCGGGAAT GGCGACGCGT
CAGCGCGAGC TGGCGGTACT GCGCACCTTC GGAGCCTCTG GCTGGCTGCT GCGTATGGCC
ACCGCACTGG AGTTTGCCCT GCTTGGGCTG ATCGCCGGCC TGCTTGCCGC CATAGTCGCC
GAGTTTACCA TCTACCTGCT GAAGACCCAG GTGTTTGAGC TGGTGGTCTA TATGCATTGG
GACTGGTGGC TGTTGGCGCC GCTTGCCGGC GCGGCCATCG TCGCGCTGCT CGGCACCTGG
CGTTGTCGTC AGCTATTGCA GAAGTCCTGT CGACAACTCC TGCAGGGCTA G
|
|---|
| Protein sequence | MESRIAWKLF KRELLQGQLL LIILAITLAV FSVSGLARVS ERLQLAINGQ ASKFIAADRI
INSPVPLDDK ILAKADALGL RHVASMQFNS MAYAGDAFQL VTVKAVGEGY PLKGVIELSD
GPTDKLPKAD QLWYETRLGG ILGYPKQLEL GNANFSLSAE IARLPDAGFN PFASSPVVLM
RLQDVPKTGV IQPGSRVSYI HQFAGEADQL KAFEAEVKPL LNNSQRWVDV QSGDSPIAGA
VKRAERFLLL ASLLGIALAC AAIGIAAQRY CQRHFDVVAM LKTFGASSRQ IRILFGLHLL
LVTLAGIALG LIGGFLLDTL ISAYLPASIS AYSPPLFRPI ALGVATGLIS AFMFSAYPLM
RLLAIPPLRV LQRQLEGIQL GMWLHLVLSL SAMALLGYLY SQSLVLTLTV VAAVMLLGVL
LSLFGFLLIR AGHSVGMKTT NPMQLALAGL RRRARQNAVQ LVGFSSALVL LLTIIALRQD
LLDEWHKQLP EQSPNYFLVN IAPEEQAPLE AYFSDNRVKA TDIYPVIRGR LVAINGEKLI
SAEQADEGAQ GRVGISRELN LTWRTSLPPN NELLSGHFNQ KADEVSVESG VAERLGIGLG
DELSYVIDNQ PLTVKVASIR AVHWETMQPN FFMIFHPDAL APFAYTSMAS FYLDDSKRPM
VIELIKRFPT VSIIDVGAMV KQLRQIIDQV SLSLTLVLVL VLLASSLVMI AQTEAGMATR
QRELAVLRTF GASGWLLRMA TALEFALLGL IAGLLAAIVA EFTIYLLKTQ VFELVVYMHW
DWWLLAPLAG AAIVALLGTW RCRQLLQKSC RQLLQG
|
|---|
| |