| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2359 |
|---|
| Symbol | |
|---|
| ID | 4921731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2759661 |
|---|
| End bp | 2760251 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163949 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_001094484 |
|---|
| Protein GI | 127513287 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000880507 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.472241 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCT TAGATCAACT ACTCGAGCGT ATTGCCTGCT GTCAGATCTG CCAGCCGCAT
CTTAGCCATA AGGTGCGGCC CGTGCTGCAG GCGGCATCAA GCGCCAAGGT GTTGATTGTC
GGTCAGGCGC CGGGCACTAA GGCCGCGGCC AGCGGGCTTC CCTTTGACGA TCCCAGCGGT
GACAGGCTCA GGGATTGGCT CGGTGTTAGC CGCGAGCAGT TTTACGATTC TTCCTTGTTT
GCCATAGTCC CCATGGGGTT TTGTTATCCG GGGAAGGGAC GCTCTGGGGA TTTGCCGCCA
AGGGGAGAAT GTGCGCCGGC CTGGCGAGAG CCTCTGCTGG CACACCTAAA AAACATTCAA
CTCACCTTGG TGATCGGCCA ATATGCCCAG GCCTATCATT TCGGTAAGCA GTGTGGCGGG
GTGACCGAGT GCGTGCAAGG CTGGCAACAA CATGGCAGCC ACATAATGCC GCTACCGCAT
CCCAGCCCTC GCAATAATCT CTGGCTCAGG CGTAACCCTT GGTTTGAAAT CGAATTATTG
CCCGTACTCA AGGCTCGGGT GGCGAGCGCT ATCGCGCAAA AGCGTCTTTA G
|
|---|
| Protein sequence | METLDQLLER IACCQICQPH LSHKVRPVLQ AASSAKVLIV GQAPGTKAAA SGLPFDDPSG
DRLRDWLGVS REQFYDSSLF AIVPMGFCYP GKGRSGDLPP RGECAPAWRE PLLAHLKNIQ
LTLVIGQYAQ AYHFGKQCGG VTECVQGWQQ HGSHIMPLPH PSPRNNLWLR RNPWFEIELL
PVLKARVASA IAQKRL
|
|---|
| |