| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2244 |
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| Symbol | |
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| ID | 4922880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2621298 |
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| End bp | 2623976 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640163829 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001094369 |
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| Protein GI | 127513172 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00187564 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACTCTT TGACCTTAAC AGCAAAAGCG GTTCGCGTAG GCTTATTTGC CGCCGCGACA
TCTAGCATTG CATTTTCTGG TATCGCAATT GCTGAAGAGC AAAGCGATAA AGTTGAACGC
ATCGAAGTAA CTGGTTCGCG TATTAAGCAA GTTGATATGG AGACTTCGTC TCCTGTGACT
GTATTAAGTG CGGCAGATAT CGCGTTGACC GGTGAAAAAA CTGTTGCCGA CGTATTGAAT
AACTCTTCTA TCAACGCCTT TGGTTCTTGG CGTGGTACTT CGGGTTATGG TTCGGGTGCG
AGTGCGACTT CAACAGTCAA CATGCGTGGT TTAGGTTCTC AGGCTACCTT GGTATTGCTT
GATGGCCGTC GTATGCCTGG TACCAGCTCT AGCTCGGGTG CCGAGGCAGA TACATCTCAG
ATTCCACTAG CAATCGTTGA ACGTATCGAG ATCCTACGTG ATGGTGCATC TGCAGTTTAT
GGCTCAGACG CCGTAGCAGG TGTAATTAAC ATCATTACCA AGAAAGAGTT TGATGGATTC
CAAGTCGACT TCAGCACAGA GCAGCCTAGC GTAGAAGGCG GTGATGCCAA TCGTTTCTCT
ATTGCGGCTG GCTTCAACTC TGAGAAAGGT AATGTGACTT TTACCTATGA GTACTATGAC
ACTAAGGCTG TGATGGACCG TGACATCTGG AACATGGATG ATCCTAGCTA TGGTGACTAC
AGCTCTTTTA GCTCTGTGCC GAATGGCTAT TATAACACCG GCGAGAAAGA TGCCGATGGC
GATGATATCT ATGCATTCTA CTCAAACTCT GAGATGTGTG CCGATACCGA TAACGTTGCC
GATACCACAG ATGGTCAGAA CAATGGTCGC TGTCTATACA GCTATGGCGC GGTAACCAAG
CTATTTGGCG ACATGACCCG CAACTCTTTC ATGACCAACT TTAACTATGA CATCACGGAT
AACATTCGCT TCCGTGGTCG TGGTACCGCA TCTTTGAGCG AAACCAACAC ACGTTATGCC
GGTACACCTG TATCGACTAA CTATCCTGTG ATGAGCGCGG ATAACCAATA TAACCCAACG
GGTAAGGACA TGACGCTGTA CATGCGCTCT GTTCAGATTG GTGAGCGTGA CACCCTAACA
GAAACAAACA GTTTCGACAT TCTAGGTGGC TTCGTAGGCT ATGCCGACGT GGGTAATGGT
ATCGATTGGG AGCTGAACGC ACAGCACTCT GCGTCGACCA CTAACGCCTT TAACTACAAC
CTGATCAACG ACAACATCAT TCAGAGCGAG ATCGATACTG GCAACTATGA TGTCTTCAAT
ACCTCGGGTA TGAGCTATGC AGAGTGGGAG CAGCAGATGA CTGCACTCTA TTCTGCCGCA
AACCACACTG GTGTATACCA AGGTAAGTTC GACAGCACGC AGATCGACGG CCTTGCCAGC
ACCATGCTGT ATGAACAAGG TGATTTCTCA TTGGCCATCG TAGGTGGTTT AGAGTATGAG
ATGATCAACT TCAAGCAAAC CTCTGATCCA GAGTCGGCTT CTGGCATTAT CTCTGGTGGT
TCGGGTGGTG ACGATGTTGA TGCTGAGCGT ACACGTCAGT CTGCCTATAC CGAAATCCAG
ATGGCACTGC CTGCCAACTT CGAACTGTCA GCGGCGCTAC GTTATGAGCG TTATGAGCAG
GAAGGTACCT TGACGGGTGC AGAAGGTCAG GTGACTAACT CTTCTACATT CGATGCCGTT
GTACCTAAGT TTGGTTTGAG CTGGCGCCCT GTCGATTCGT TGCTGCTTCG TGCTAGCTAC
GGTGATTCAT TCCGCGCACC AAATATGGGT GAGATGTTCT CGTCGCAATC TCTGAGTTTC
GAGAAAGCCT ACGATTCGGT TTGGTGTGAA GCCAACAACA ATTCTGACGC CAACTACTGT
GCTACAGGTA ACCAGCACAA GACTTGGTTT GGTGGTAACC CGAATCTAGA AGCGGAAGAG
GGTAACTCAC TGACATTGGG TGGCGTCTGG AACGTGACCG ATGCGTGGAG TGTTGAACTA
TCATATTACT CAATCACTTA TGACAACAAA ATTGAAGCCG TTAGCGCATC AGACGTGATC
CGTGATGAGA AGATCAACGG TGGCTCTGAC TTCGTGACTC GTGGCCCAGA CGGTAAGATT
GAGTACCTTG AAAGTGGTTA TGTGAACAAG GCATCGCTGG AAACGTCTGG TTTTGACTTT
GCTTCTTCAT ACAACTTCGA GACAGGCTTC GGTGACTTCA ACCTTAAGCT AGATGTTACT
CACATCCTCG ACTTTAAAGA GCAGGCCGAT GCCGAATCTG AGAAGATCGA TTACTCAGGT
ACGCAAGACT ATCCTGATTG GCGTGGTAAC TTCGCCGCGG CTTGGTACTA CAACGATTTC
AGCGCGGCTT GGACAACCGT GTATATCGGT AGTCAGTCAG GTGCAATGTG GCGCGACCTT
GGTTACGACT ACATCATCGA CACACCAAGC TACTTCAAGC ATAACTTCCA GGTGGGTTAT
ACCCATGATT GGAACGGTAC TATCACAGTG GGTGTGAACA ACCTGTTCGA CGAAAAAGCA
CCGACTTGGT ATGACTATGC GGGTTATCGC GATGTGAACA CCAACCTATA CGATGTATTG
GGTCGTACCT TCTATCTGCG TATTAACCAG AAGTTCTAA
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| Protein sequence | MNSLTLTAKA VRVGLFAAAT SSIAFSGIAI AEEQSDKVER IEVTGSRIKQ VDMETSSPVT
VLSAADIALT GEKTVADVLN NSSINAFGSW RGTSGYGSGA SATSTVNMRG LGSQATLVLL
DGRRMPGTSS SSGAEADTSQ IPLAIVERIE ILRDGASAVY GSDAVAGVIN IITKKEFDGF
QVDFSTEQPS VEGGDANRFS IAAGFNSEKG NVTFTYEYYD TKAVMDRDIW NMDDPSYGDY
SSFSSVPNGY YNTGEKDADG DDIYAFYSNS EMCADTDNVA DTTDGQNNGR CLYSYGAVTK
LFGDMTRNSF MTNFNYDITD NIRFRGRGTA SLSETNTRYA GTPVSTNYPV MSADNQYNPT
GKDMTLYMRS VQIGERDTLT ETNSFDILGG FVGYADVGNG IDWELNAQHS ASTTNAFNYN
LINDNIIQSE IDTGNYDVFN TSGMSYAEWE QQMTALYSAA NHTGVYQGKF DSTQIDGLAS
TMLYEQGDFS LAIVGGLEYE MINFKQTSDP ESASGIISGG SGGDDVDAER TRQSAYTEIQ
MALPANFELS AALRYERYEQ EGTLTGAEGQ VTNSSTFDAV VPKFGLSWRP VDSLLLRASY
GDSFRAPNMG EMFSSQSLSF EKAYDSVWCE ANNNSDANYC ATGNQHKTWF GGNPNLEAEE
GNSLTLGGVW NVTDAWSVEL SYYSITYDNK IEAVSASDVI RDEKINGGSD FVTRGPDGKI
EYLESGYVNK ASLETSGFDF ASSYNFETGF GDFNLKLDVT HILDFKEQAD AESEKIDYSG
TQDYPDWRGN FAAAWYYNDF SAAWTTVYIG SQSGAMWRDL GYDYIIDTPS YFKHNFQVGY
THDWNGTITV GVNNLFDEKA PTWYDYAGYR DVNTNLYDVL GRTFYLRINQ KF
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