Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2140 |
Symbol | |
ID | 4923360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2486164 |
End bp | 2487036 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163725 |
Product | hypothetical protein |
Protein accession | YP_001094265 |
Protein GI | 127513068 |
COG category | [K] Transcription |
COG ID | [COG2378] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000023466 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCGA TGGAGAGTTT GTCATTTGCC CAGCGGCAAC GTCTGGCGTT TATCGACTTT AGTTTGCAGT ATTTTGGCCA GGTATCACGC CAGGACTTGA TCGCCAAATT CGCCACAGGC CTGGCGGCGG CGACAAGGGA TTTCTCCAGC TACCGCGAGT TGGCGCCCCA CAACATGGAG CTGGTGCATC AGACCAAGCG TTACCATAGG CGCGCCGAGT TTACCCCGCT GTTTGACCAT GATCCCGAGG CGATCCTCCA CGGGTTGGCC AATGGTTTCG GCGACGGGCT ATCCCATCCG GTGACGCCAA GTAGCGTCTG TCTGGATGCG GTGCAGCTTA TTCATCCCGA TACCAATATT ATTGCCGCCG TGATGCGGGC TATCGCCCAT AAGCAGGCGA TAGCCGTGAC TTATGTGTCC GTGTCATCGG GGGAAACTCA CAGAGAGCTG GTGCCGCACA CCCTGGTGAA TAATGGACAG CGCTGGCATG TACGCTGTTT CGATCGCACC CATCAGGTGT TTACCGACTT TGTGGTGACC CGCTTCAAGG CGGTGACTCA GAGCGCCACC GAACCCTTCG ACCATGAGCT GCAAGAAAAG GATGGCTACT GGCAGAAGTT GGTCTCTCTG GTGTTGATCC CCCATCCCAG CCTGATGCAT CCCGAGGCGA TTGCGCTGGA CTATCAGATG AGCGAGGGGG AATTGGTAAT TAGTTGCCGT GCCGCTCTGG CAGGTTATCT GCTGCGCCAG TGGAGCGTAG ACTGCTCGGC TCAGCATCAG ATCCGCAGCG GCGTCTGTCA GCTCGCCCTT AAGAATCACG CCATCTTAAG CGAGATAGAG CATCTGGCTA TAGTGCCGGG CGCCAAGGCA TAA
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Protein sequence | MDAMESLSFA QRQRLAFIDF SLQYFGQVSR QDLIAKFATG LAAATRDFSS YRELAPHNME LVHQTKRYHR RAEFTPLFDH DPEAILHGLA NGFGDGLSHP VTPSSVCLDA VQLIHPDTNI IAAVMRAIAH KQAIAVTYVS VSSGETHREL VPHTLVNNGQ RWHVRCFDRT HQVFTDFVVT RFKAVTQSAT EPFDHELQEK DGYWQKLVSL VLIPHPSLMH PEAIALDYQM SEGELVISCR AALAGYLLRQ WSVDCSAQHQ IRSGVCQLAL KNHAILSEIE HLAIVPGAKA
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