Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2079 |
Symbol | aspS |
ID | 4923615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2402603 |
End bp | 2404381 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163661 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_001094204 |
Protein GI | 127513007 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.725699 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGTC ATTATTGTGG AGACGTTAAT CGGTCTCATG TTGGGGAAGA AGTTACTCTC GTAGGTTGGG TAAACCGCAG TCGCGATCTC GGCGGCGTGG TTTTTCTGGA TTTGCGCGAC CGTGAAGGCG TGATTCAGGT AGTATATGAT CCTGATCTGC CAGAGGTATT CGATGTCGCC AGCACACTGC GCAGCGAGTT CTGTGTTCAG GTTAAAGGCC TGGTACGCGC GCGTCCCGAC AGCCAGATCA ACGATCAGAT GCGCACAGGT GAGATTGAGG TGCTGGGTAA GGCCCTGACC ATTCTCAACA GCGCACCGGC ACTGCCGATC AACATGGACA AAAATCAACA CAACACCGAA GAGCAGCGTC TTAAGTATCG CTACCTGGAT CTGCGTCGCC CAGAGATGGC CGAGCGCATC ATCTTCCGCT CTAAGGTGAC CAGCGCCGTG CGTCGTTTCC TCGACGGTAA CGGCTTCCTC GATATCGAGA CCCCAATTCT GACCAAGGCA ACCCCAGAAG GTGCCAGGGA CTATCTGGTG CCTAGCCGTA CCTACAAGGG CCAGTTCTTC GCGCTGCCAC AATCACCACA GCTGTTTAAA CAGCTGCTGA TGATGTCTGG CTTCGACCGT TACTACCAGA TCGTGAAATG TTTCCGCGAC GAAGACTTAC GCGCCGACCG TCAGCCTGAA TTTACCCAGA TCGATATCGA AACCTCTTTC ATGACCTCAG CGCAGGTGAT GGACAAGACT GAAGAGATGG TACGCGGCCT GTTTAAAGAG CTGCTGAACG TCGACCTGGG CGAGTTCCCT AAGATGACTT TCGCCGAAGC GATGCGCCGT TACGGCTCAG ACAAACCAGA TCTGCGTAAC CCGCTGGAGC TGGTCGATGT AGCCGACCTG GTTAAAGATG TCGACTTCAA GGTGTTCCAG GAGCCAGCCA ACGACAGTGA AGGCCGTGTT GCCGTGCTGT GTGTGCCGGG CGGCGCTAGC CTGTCACGTA AGCAGCTCGA TGAGTATGGC AAGTATGTCA ACATCTATGG CGCCAAAGGC TTGGCGTGGA TGAAGGTCAA CGAGCTGGAG AACGGCCTGG AAGGCATTCA GTCACCAGTG CTTAAGTTCT TAAGCGAAGA GGTGGTTAAG GGGATCCTGG AGCGCACAGG TGCGGCCAAC GGTGACCTAA TCCTGTTCGG TGCCGACAAG GCGAACATAG TAGCCGAAGC CATGGGCGCG CTGCGTCTCA AGGTAGGTGA AGATTTCGAT CTGCTTCAAG GCGACTGGAA ACCGCTATGG GTGGTTGACT TCCCAATGTT CGAGCGCACC TCTGACGGTG GCCTGCATGC CATGCACCAC CCGTTCACTG CGCCGAGTGG TATCACGCCA GCCGAGCTGG AAGCGGATCC AACGGCGGCC ATCTCTGACG CCTATGACAT GGTACTTAAC GGTTGTGAAC TGGGCGGTGG CTCGGTACGT ATCTACGACG CCGAGATGCA GTCGGCCGTG TTCAGAATCC TGGGGATTAA CGATGAGGAA GCCCAAGAGA AGTTTGGCTT CCTGCTAGAG GCCCTCAAGT ATGGTACGCC GCCACACGCA GGTTTGGCAT TCGGCCTCGA CCGTATGGTG ATGCTGATGA CAGGTGCCAG CTCGATTCGC GACGTGATGG CTTTCCCTAA GACCACCACG GCAGCCTGTC CGCTCACCAA CGCCCCTGGC TTTGCTAACC CGGTACAGCT CGAGGAGCTT GGGGTGAGTG TAGTGGAAGC GAAAAAAGAG CAGGAATAG
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Protein sequence | MRSHYCGDVN RSHVGEEVTL VGWVNRSRDL GGVVFLDLRD REGVIQVVYD PDLPEVFDVA STLRSEFCVQ VKGLVRARPD SQINDQMRTG EIEVLGKALT ILNSAPALPI NMDKNQHNTE EQRLKYRYLD LRRPEMAERI IFRSKVTSAV RRFLDGNGFL DIETPILTKA TPEGARDYLV PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF MTSAQVMDKT EEMVRGLFKE LLNVDLGEFP KMTFAEAMRR YGSDKPDLRN PLELVDVADL VKDVDFKVFQ EPANDSEGRV AVLCVPGGAS LSRKQLDEYG KYVNIYGAKG LAWMKVNELE NGLEGIQSPV LKFLSEEVVK GILERTGAAN GDLILFGADK ANIVAEAMGA LRLKVGEDFD LLQGDWKPLW VVDFPMFERT SDGGLHAMHH PFTAPSGITP AELEADPTAA ISDAYDMVLN GCELGGGSVR IYDAEMQSAV FRILGINDEE AQEKFGFLLE ALKYGTPPHA GLAFGLDRMV MLMTGASSIR DVMAFPKTTT AACPLTNAPG FANPVQLEEL GVSVVEAKKE QE
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