Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1950 |
Symbol | |
ID | 4920983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2254562 |
End bp | 2255656 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640163519 |
Product | phosphoserine aminotransferase |
Protein accession | YP_001094075 |
Protein GI | 162139867 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG1932] Phosphoserine aminotransferase |
TIGRFAM ID | [TIGR01364] phosphoserine aminotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.471166 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00532682 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAGCGCGA CATATAATTT CTGTGCAGGG CCGGCCATGT TACCTCAGCC CGTGATGCAA AAAGCACAAG AGGAGTTATT GGATTGGAAC GGGCAGGGTG TCTCCGTGAT GGAGATCAGC CATCGTAGTA AAGAGTTTAT CGCGCTTACC GAGCAGGCCG AGGCCGACAT CAGAGACTTG ATGAATATTC CCAGCAACTA CCATGTGCTC TTTATGCATG GTGGTGGTCG CGGACAGTTC GCCGCTGTCG TGAATAATTT ATTGGGTGAA CAGGGTAAGG CCCTCTATCT GGTCGATGGC AGCTGGTCAT CTGCGGCGGT TGAAGAAGCC AAAAAACTGG CCGGCGACGC CCAAATAGAT ACATTAAACA TTGTCGAAAA AACTAATGGT ATCAGCCGTA TCGTGGTGCC AGATCTTAAC GAAATCAAAC AGGATTATCG TTACCTGCAC TACTGCCCAA ATGAGACGGT AGATGGTATC GAAATTTTTG AAGAGATAAA TTCGCCTTGG CCGATTGTTG CCGACATGTC CTCAAACATC ATGTCTCGCG AGATTGATGT CAGCCGCTAT GGACTCATCT ATGCTGGTGC GCAGAAGAAT ATCGGGCCAT CGGGCTTAAG CATTGTCATC GTTCGCGACG ACTTACTTGC GTATCCGCAG CTCACCCAGG CGTCTATCAT GGACTATCGC CTGGCCGTAA AACATGACTC CATGTTCAAC ACGCCGCCGA CTTTTGCCTG GTATCTGGCT GCCGAAGTTT TCAAATGGCT CAAGGCTCAG GGTGGGGTGG CGGAGGTTGC CAAGGTCAAT GATCGTAAGG CCGAGACGCT CTATGCCTAT ATCGACAGCG GCGATTTCTA TGAAAACCGC GTCGCGGTTG CTAACCGCTC GAAAATGAAC GTGACCTTCT ATCTGAAAGA TGAGTCGTTG AACGAGCCGT TTTTGGCAGA AGCTAAGGCC GCAGGCTTAG TAGCGCTAAA GGGTCATCGC AGTGTCGGCG GTATGCGCGC CAGCCTCTAC AACGCCATGC CATTAGTGGG TGTCGAGGCC TTGGTGAGCT TCATGAAAGC CTTCGCCGAA AAACACGTTG CCTAG
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Protein sequence | MSATYNFCAG PAMLPQPVMQ KAQEELLDWN GQGVSVMEIS HRSKEFIALT EQAEADIRDL MNIPSNYHVL FMHGGGRGQF AAVVNNLLGE QGKALYLVDG SWSSAAVEEA KKLAGDAQID TLNIVEKTNG ISRIVVPDLN EIKQDYRYLH YCPNETVDGI EIFEEINSPW PIVADMSSNI MSREIDVSRY GLIYAGAQKN IGPSGLSIVI VRDDLLAYPQ LTQASIMDYR LAVKHDSMFN TPPTFAWYLA AEVFKWLKAQ GGVAEVAKVN DRKAETLYAY IDSGDFYENR VAVANRSKMN VTFYLKDESL NEPFLAEAKA AGLVALKGHR SVGGMRASLY NAMPLVGVEA LVSFMKAFAE KHVA
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