| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1941 |
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| Symbol | |
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| ID | 4921475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2240803 |
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| End bp | 2242644 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163510 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_001094066 |
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| Protein GI | 127512869 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0528777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0163156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTA AGCCCTCAAT ATTTAAACGG ATCTTTTCCA CCTTGTGGAA GGTGGTCAAC
ACCACACGCA AGGTGATCTT AAATCTATTC TTCTTCGGTT TTATTGCCCT CTTGTTCGTG
ATCCTCGCCG GTGAGGAGAG CCCAACAGTC GAAGAGGGTT CGGCATTAGT GCTGGATCTA
TCGGGTAACG TGGTAGAACA GAAACGCCAG GTGGACCCCA TAGAGGCTGC TATGAAGAGT
GGTAAAGGGG GACAGAGCGA TGGCGAGATC CTACTTGCCG ATCTGCTAAA CGCTATCGAC
AATGCGGCCA GCGACAAACG CATCTCCGCC TTAGTGCTCG ACATAGGTCA CCTAAGATGG
ACAGGGATCA GCAAGCTGCA GAGCATAGGC GACGCATTGA CCCGCTTTAA GGCCTCAGGC
AAGCCGATTA TCGCCATGGG TAACTGGTAT GGTCAAAACC AGTACTTCCT CGCCAGTTTC
GCCGATACCA TCTACCTCAA CCCTCAAGGT TCGGTAGAGA TAGAAGGCCT GAGCCGCTAT
CGCCAATATT TCAAGTCGGC ACTGGACAAA CTTAAGATCA AGGCGCACGT CTTCAGGGTG
GGCACCTTCA AGTCGGCGGT CGAGCCCTTT ATGCGCGACG ACATGTCTGA GGCGGCGAAA
TCGGCCAACC GCGAGTTGCT GCAAGATATT TGGGACAGCT TCGAAGCCAC GGTCAGTGAA
AACCGCGGCA TCAAGCAAGA CGACCTGATG CTGAGCGCCG AGCGTTATCT TACCGAGCTG
AACAAGGCCA ATGGACGCTC ATCCGAGATG GCCATCAACC TTGGCTGGGT CGATAAGCTC
GCCTCTGCCG AGCAGTTCCG TCTGGACATG GTCGAACGCG TAGGAGAAGC AAAAGAAGGT
CACAGCTTTA AACAGATAAG CTTCTATGAC TATCAGAGCG TGATCCAGCA GTTCCCACCA
GTGTTGATGC ACGACGCCGT CGGCATCATA GTCGCCAAGG GCAACATACT CAATGGTCAC
CAGGCAGCGG GCCAGATCGG CGGCGAGAGC ACCTCTGCCC TGCTGCGCAA GGCGAGATTC
GATGACAAGG TGAAGGCTGT GGTCCTCAGA GTCGACAGCC CTGGCGGCAG CGCATTTGCC
TCCGAGCAGA TCCGTCAGGA AGTGTTGGCC CTCAAGGCAG CCAACAAGCC TGTGGTCGTT
AGTATGGGCA CCTACGCCGC CTCGGGTGGC TACTGGATCT CGGCAAGCGC CGACTATATC
TACGCCACAC CAACGACGCT GACCGGCTCT ATCGGTATCT TCGGCATGAT GACCACCTTC
GAAGACTCCC TGGCAGAACT TGGGATCCAC ACAGATGGCG TCTCCACATC AGGCTGGACC
GCATTCTCAA GCACTCAGGG GATCAGCGAT GAGCTCAAGG AGATCATCCA GCGTCATATC
GAGCGCGGCT ACCAGGACTT CATCTCGCTC GTTTCAGAGG AGCGCGGCAT GAAACCCGAA
GAGGTGGATA AGATTGCCCA GGGTCGTGTC TGGTCTGGCA AACGCGCACT TGAGCTTGGC
CTGGTCGATG AACTTGGCGA TCTTGAACAG GCGGTAACTA AGGCAGCCGA GCTGGCTAAG
CTTGAGAAGT TCGATACTAA GTTGATCGAA CAGGAGCTGT CGCCACAGGA GCAGTTCATC
CAGCAGATGT TTGCCCAGGC TGTTAGCTAT ATGCCACAGA GTCTGTCTCA GAGCAGCCTA
ATCGAACAAC TGCTTGGTGA GGTGAGCAGC GTAGTCGAAG AGTTTAACGC CTTTGACGAT
CCAAACGGAA TCTACCTCTA CTGCGACAGC TGTAACTACT AA
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| Protein sequence | MSAKPSIFKR IFSTLWKVVN TTRKVILNLF FFGFIALLFV ILAGEESPTV EEGSALVLDL
SGNVVEQKRQ VDPIEAAMKS GKGGQSDGEI LLADLLNAID NAASDKRISA LVLDIGHLRW
TGISKLQSIG DALTRFKASG KPIIAMGNWY GQNQYFLASF ADTIYLNPQG SVEIEGLSRY
RQYFKSALDK LKIKAHVFRV GTFKSAVEPF MRDDMSEAAK SANRELLQDI WDSFEATVSE
NRGIKQDDLM LSAERYLTEL NKANGRSSEM AINLGWVDKL ASAEQFRLDM VERVGEAKEG
HSFKQISFYD YQSVIQQFPP VLMHDAVGII VAKGNILNGH QAAGQIGGES TSALLRKARF
DDKVKAVVLR VDSPGGSAFA SEQIRQEVLA LKAANKPVVV SMGTYAASGG YWISASADYI
YATPTTLTGS IGIFGMMTTF EDSLAELGIH TDGVSTSGWT AFSSTQGISD ELKEIIQRHI
ERGYQDFISL VSEERGMKPE EVDKIAQGRV WSGKRALELG LVDELGDLEQ AVTKAAELAK
LEKFDTKLIE QELSPQEQFI QQMFAQAVSY MPQSLSQSSL IEQLLGEVSS VVEEFNAFDD
PNGIYLYCDS CNY
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