| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1851 |
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| Symbol | |
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| ID | 4924299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2128155 |
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| End bp | 2129240 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163419 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001093976 |
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| Protein GI | 127512779 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000181813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00565244 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA CGATAATAAT CTCAATGCTT TTAGCGGCGG GCGCCGCCAC CTACTATTTC
ACTCAGCAAA CCGAAACGCC TAAGGGGCCA CGCGGGCGGC CTACGCCTAA CGTGGTAGTG
GCAAAGGCCG AAATGCAGCC GATTCGTGAC GAGGTAGAGG CCCTGGGAAC CGGTAAGGCC
AACGAATCGA TCACTGTGAC CCCTAAGGTC ACCGACATGG TGACCGAAAT CAATTTCAAC
GACGGTCAGA TGGTCGATAA GGGCCAGCTT CTGGTGCGTT TGCAAGACAG AGAGCAGATC
GCCCGCGTGA CTGTGGCCCG GGTGAAGATG AAAGATCATG AGCGCGAACT GGCGCGTATC
AGCTCACTGG TCACCAGTCA GACGGTGGCG GCACTGGAGC GCGACAGGCT GCAGACCCTT
ATCGATACCG CCAAGGCCGA GCTGGATCAG GCAGAATCTT CCCTCAAGGA CAGACGCATA
CTGGCACCAT TCTCTGGCCG CCTGGGCCTG CGTCAGGTGA GTCAGGGCAG CCTGGTAACG
CCAGGTACAG TGATCACCAC CTTAGATGAT ATATCCACGA TCAAACTGGA TTTCTCCGTG
CCTGAGCGCT TCCTGCAGTC TCTGGCGATA GGTAAGTCGG TCGAGGCCAG CGCCGTGGCC
TTCGAAGGCG AGCTCTTCAC CGGTAAGGTG GTCTCTGTTG ATAGCCGCAT CAATCCGACC
ACACGCGCGG TGACGGTGCG GGCCGAGATC CCCAACAAGG GAATGCGTCT GCTACCCGGC
ATGTTGATGA AGGTGAAGCT TATCAAGCAG AGCCGCGAAG CACTCATCAT CCCAGAGGCG
GCGATTATCC CGATTCAGAA AGATCACTTC GTCTACCTGG TGAATGATGA GAACGTGGTC
GAGCGTCGTC AGGTGCAACT AGGCCTGCGT AAACGCGGCT GGGTGGAGAT TGTCGGCGGT
GTAGATGTCG GCGAGCAGGT GATGGTACGC GGCATTCTCA AGGTGCGCCC AGGCGATACC
GTCAAGGTGC AATACAGCGA ACATTTCAGT TTCAACCAAC AAGCTAAGGT GGAGCCGCTA
GCATGA
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| Protein sequence | MKKTIIISML LAAGAATYYF TQQTETPKGP RGRPTPNVVV AKAEMQPIRD EVEALGTGKA
NESITVTPKV TDMVTEINFN DGQMVDKGQL LVRLQDREQI ARVTVARVKM KDHERELARI
SSLVTSQTVA ALERDRLQTL IDTAKAELDQ AESSLKDRRI LAPFSGRLGL RQVSQGSLVT
PGTVITTLDD ISTIKLDFSV PERFLQSLAI GKSVEASAVA FEGELFTGKV VSVDSRINPT
TRAVTVRAEI PNKGMRLLPG MLMKVKLIKQ SREALIIPEA AIIPIQKDHF VYLVNDENVV
ERRQVQLGLR KRGWVEIVGG VDVGEQVMVR GILKVRPGDT VKVQYSEHFS FNQQAKVEPL
A
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