| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1828 |
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| Symbol | |
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| ID | 4924346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2103707 |
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| End bp | 2105083 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163396 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_001093953 |
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| Protein GI | 127512756 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0125895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTGA GACGCATTTT CATATTGCTT CTGCTGTGTT GGTCATGCTT AGGTGTTGCC
GATGAGCGTC TCGCTGCGGC AAATCAGGCG TTGCTCGATC AGGTGGAAGT GATCCACCTT
GCCAGTGCCT CCAGCGAGTT TGAGCGCTAT CGTGAGCAGC TCAGTGTGGA AAGAGCGCTC
TCTCCAGCAA GGCTCTATAC CATAGCCCTG GCCGCCGCTC AGTTTTGGCA GCGCCAAGGC
ATAGCGACCG GCGAGTTTCC TTCAGCGCCT GACGATCCCT ATACCAGTGT GATCGCCAGC
GAGCCCCAGG TAGCCGATTA TCTGATGCTG AGTAATCGCG TGCGCTATCT TCTTTGGTTG
GCGCGCCATG AGTCCTGGTT GCCACTCGAG CCCCAAGGCT GGCTAAAGCC CGGCGACAGT
CATAGAATCA TTCCCGAAAT AAGAGTGCGC CTGCAGGCCT TGGGAGATTA TCCCCAAGGG
GATACCAGTG GCCTCTATTT CGATGAGACG TTAAAAGCGG CCATGATCAA ATTCCAGACC
CGCCATGGCC TCAAGCCTGA TGCCATCATA GGTCCCGCTA CCCTTAGTTG GCTTAATCGC
ACTCCCAGAG AGCGTGCTCA GCTCTTGGCG GTCAACTTTA TCCGCCGGGC CGAGTATCTG
GCTGACATAG GGGAGCGCTA TCTGCTTATT AATATCCCCG CCTATGAGAT GTGGCTGGTG
GATGATAATC AGGTGGCGCT CAGGTCTAAG GTGATCGTTG GTAAGCCTTA TCGCCAGACG
CCTATCATCA GCGGCGAGAT AAAGAATCTG GTGCTCAATC CCAGTTGGCG GGTGCCGCGC
CGCTTGTTGA CCCATGATCT CCTGCCCAAG GTGAGAGAGG ATGGCAGCTA TATCAGCAGC
CGCAACTTCG AGGTGTTTGA CTATCAGGGA GAGCGGGTTA TCAAGAGTGA CGATGAATGG
CGCGACATCG CCAAGGGTAA GTTTCCCTAT CGCCTGGTGC AAAAGCCTGG GGTTGGAAAT
ACCCTGGGGC GCTACAAGTT CTTCTTTCCT AACGAGTACA GTGTCTATCT ACACGATACC
TCAGACAAGG CGCTGTTCCA GCGTAGTGAC AGGGCGCTCT CATCGGGTTG TATTCGGATT
GAGAAGGTTG AGCAGTTAGC CAACTGGATG GCTTCCCATC TGGTGCGTGA CAAGCAGACC
TGGGTACGTA TGCAAATCGA GCGAGATAAG ACCCAGTGGT TTGCCTTCGA TGCGGGCCTA
CCTATACATC TAGTGTATTG GACCTCCTGG CTGGATGACG ACAATGTTGC CCAGTTTAGA
GACGACATAT ACAAAAAGAA TCAAAATATT AGTCTGAGTC TCCACGCCGC AAAATAG
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| Protein sequence | MALRRIFILL LLCWSCLGVA DERLAAANQA LLDQVEVIHL ASASSEFERY REQLSVERAL
SPARLYTIAL AAAQFWQRQG IATGEFPSAP DDPYTSVIAS EPQVADYLML SNRVRYLLWL
ARHESWLPLE PQGWLKPGDS HRIIPEIRVR LQALGDYPQG DTSGLYFDET LKAAMIKFQT
RHGLKPDAII GPATLSWLNR TPRERAQLLA VNFIRRAEYL ADIGERYLLI NIPAYEMWLV
DDNQVALRSK VIVGKPYRQT PIISGEIKNL VLNPSWRVPR RLLTHDLLPK VREDGSYISS
RNFEVFDYQG ERVIKSDDEW RDIAKGKFPY RLVQKPGVGN TLGRYKFFFP NEYSVYLHDT
SDKALFQRSD RALSSGCIRI EKVEQLANWM ASHLVRDKQT WVRMQIERDK TQWFAFDAGL
PIHLVYWTSW LDDDNVAQFR DDIYKKNQNI SLSLHAAK
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