Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1625 |
Symbol | |
ID | 4923252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1857730 |
End bp | 1859106 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163187 |
Product | L-serine dehydratase 1 |
Protein accession | YP_001093751 |
Protein GI | 127512554 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0594859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.120267 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGCG TTTTTGACAT GTTTAAAATT GGTATCGGGC CCTCAAGCTC CCATACCGTA GGCCCGATGA AAGCGGGTAA TATCTTCATT CAAGATTTAG AAAAACATGG TCATCTAGCA GAAACAGATG AGCTGAGATC TGAGCTGTTT GGCTCACTCG GCCAAACTGG TAAGGGCCAC GGCACGGGTA AGGCCGTGAT CTTAGGCCTG ATGGGCGAAG CCCCTGAAAC CGTTGATACC GACAAGATCG ATGCCACCCT GGCACAGGTT CATGACACAC AAAGCTTAAC CATGCCAAAC AACAAGGTAG TGCGCTTCAG CCGTGAAGAT GGCATCACCT ACCACAGACG CAAGAGTCTG CCGGCCCACG CCAATGCCAT GACCCTCTAC GCCTATGCCA AGGGCAACTG CATCTATCAG CGTACCTATT ACTCTGTCGG TGGCGGCTTC ATCTTAGATG AAGATGAAAT TCTGGCCCAG GATGCCTCGC CAGCCTCCCC TATCGAAGCC GCGCCCTATG ACTTTAACAG CGCCGCCGAG CTGCTGGATA TGTGTGTCGA GAACGGCCTG AGCATCTCTG CGCTGATGAT GGAGAACGAA CTCTCTATTG CCAGCGAGAA AGAGGTGAAG GAGCGTCTGT GGACCATATG GCAGACCATG AAAAGCTGCG TCGAGCGCGG TTATCAGAAG GAAGGCATAC TCCCGGGCGG GCTGAAACTC AGACGCCGCG CCCCGGCGCT CTACCGCCGC CTCAAGGCCG AGAGCAAGAC AGTGGTCGAT CCGCTCACCG CCATGGACTG GGTCGATCTG TTTGCCCTGG CCGTGAACGA GCAAAATGCC GCAGGCGATC GCGTGGTGAC TGCGCCGACC AACGGCGCCG CCGGCATCAT CCCTGCCGTA CTCTGCTACT ACGACACCTT CGTTCAAGAG GTGGATCTGG ATATCTGCTG TCAGTACCTG TTGACCGCAG CCGCCATCGG CATTCTCTAC AAGAAGAACG CCTCTATCTC AGGCGCCGAA GTGGGCTGTC AGGGTGAAGT CGGCGTGGCC TGCTCTATGG CCGCCGCCGC GCTCACAGAG ATCATGGGCG GCACGGTTGA ACATGTGGAG AACGCCGCCG AGATCGGCAT GGAGCACAAC CTGGGGCTGA CCTGCGACCC AGTCGGAGGC TTGGTGCAGG TGCCTTGCAT CGAGCGTAAC GCCATGGGCG CGGTGAAGGC AATCAACGCC TCACGCCTGG CGATGCGCGG CGACGGCAAC CATAAGGTCT CTCTGGATAA GGTGATCAAG ACCATGATGG ATACCGGCAA GGATATGCGC AGCAAGTACA AGGAAACCGC CAAGGGCGGC CTGGCGGTTA ACATAGTCGA GTGTTAA
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Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGNIFI QDLEKHGHLA ETDELRSELF GSLGQTGKGH GTGKAVILGL MGEAPETVDT DKIDATLAQV HDTQSLTMPN NKVVRFSRED GITYHRRKSL PAHANAMTLY AYAKGNCIYQ RTYYSVGGGF ILDEDEILAQ DASPASPIEA APYDFNSAAE LLDMCVENGL SISALMMENE LSIASEKEVK ERLWTIWQTM KSCVERGYQK EGILPGGLKL RRRAPALYRR LKAESKTVVD PLTAMDWVDL FALAVNEQNA AGDRVVTAPT NGAAGIIPAV LCYYDTFVQE VDLDICCQYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAAALTE IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRLAMRGDGN HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC
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