Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1578 |
Symbol | |
ID | 4922445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1808244 |
End bp | 1809251 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163140 |
Product | aminodeoxychorismate lyase |
Protein accession | YP_001093704 |
Protein GI | 127512507 |
COG category | [R] General function prediction only |
COG ID | [COG1559] Predicted periplasmic solute-binding protein |
TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.853067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC TGATCAAATG CGTGCTCATC GCACTCTTTA GCTTATTAAC CTTGAGCGCG ATTGGCCTGT ATTGGGTCTA TCAGAGCGTG GTGAGTTATG GCCAGATGCC GCTTAAGCTA GAAGCCCCCG TCGAGTTTGA GGTGGCGCGT GGTACCTCCT TTTCACAGAT GGCGAACACC TTGGCACAAA CAGGTGCCGT GGACGAGCTT TGGAAGCTTA AGCTGCTGGT TAAGCTGCGC CCCGAGCTTG CCAAGATCCG CAGCGGTCTG TATCAAATTT CTCCCAATGA CACTGTGGTC GAGCTGCTCG AAAAGTTGCG TCAGGGAAAG GAGATGGTCT TCACCGTGAC CCTGGTCGAA GGGCAGAGCA TCAAAGAGTG GCGCGAGCAG CTCAAGCAAT TACCGCGCCT GAAGTGGAAG GAGGGCGCCT TCCTGGAGGT GCTTGAGGAC AATGGCGATA AGTCTAAGCT GCCCGAGGGG AAGTTCTATC CCGACACCTA CCATTATGGC AATGGCGACT CGGTTAAGGT GATTCTGCAG CAGAGCTATC AGAAGATGCA GCAGGAGCTA GACAGGGCCT GGCAGGAGCG CGACCAGAGC ATACCGCTAA AGAGTCCCTA TGAGCTGCTG ACCATGGCAT CGATTATCGA AAAAGAGACG GGTAAGGCCA GCGAGCGTCC CTGGATCTCG GCGGTCTTTA CCAATAGATT GCGTAAGGGG ATGCGTCTAC AGACAGATCC TACTGTGATC TACGGCATGG GGGAGCGTTA CCAGGGCAAT ATTACCCGCA AAGACTTGCG CGAGCAGACG CCCTACAACA CCTATCGTAT TCATGGCCTG ACGCCGACGC CCATAGCCGC GCCGAGCGGG GCATCCCTGA TGGCGGCGGC GCGTCCGGCC GATGTCGACT ACCTCTACTT CGTGTCGAAG AATGACGGCA GCCATATATT TTCTAAAACA TTAACCGAGC ACAACCGTGC TGTAGACAAG TATCAGAGAA ATCGATGA
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Protein sequence | MKKLIKCVLI ALFSLLTLSA IGLYWVYQSV VSYGQMPLKL EAPVEFEVAR GTSFSQMANT LAQTGAVDEL WKLKLLVKLR PELAKIRSGL YQISPNDTVV ELLEKLRQGK EMVFTVTLVE GQSIKEWREQ LKQLPRLKWK EGAFLEVLED NGDKSKLPEG KFYPDTYHYG NGDSVKVILQ QSYQKMQQEL DRAWQERDQS IPLKSPYELL TMASIIEKET GKASERPWIS AVFTNRLRKG MRLQTDPTVI YGMGERYQGN ITRKDLREQT PYNTYRIHGL TPTPIAAPSG ASLMAAARPA DVDYLYFVSK NDGSHIFSKT LTEHNRAVDK YQRNR
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