| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1467 |
|---|
| Symbol | |
|---|
| ID | 4921051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1689626 |
|---|
| End bp | 1691794 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163021 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001093593 |
|---|
| Protein GI | 127512396 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCAATA AGAATCACCT AGGGTTTGCC TTGCTACTGG GTCTACTGGG CTTGCTGGTC
AACCTGGCAC CTATTCCCCT GTTTGGAAAC CAACAGCTGA TCATTGGTAA CCTCTTCTTC
GTGATCGTGG CCATCTTCCT CGGCCCTTGG TATGCCCTGT TAACCTCGCT GCTTTGTGCC
ACCGGCCTCT ATATCGCCTG GGACAGCTGG CACATGTTCC TGCTGTTCCC GTTAGAGGCG
CTGTGGCTGG GCTATGCGCG GCGCAAAGAA TTCTACACCC TGTATGCGGA TATCACCTTC
TGGCTCTTGC TGGGCATGCC GCTCTTCTAT CTGTACGCCA ACCTGGTGTT TCAGATGCCC
AACAGCTACA TGACCTTTAT CACCCTCAAG CAGGGGATTA ACGGCATGCT CTATACGGCG
CTCGGCGCCA TCTGTGTCAC CATGCTGCCA AGCCAGCTGC ATATCGACGG CAAGCTGATG
AATAAGAAGC GCAAGAGCTT CAACGCCCAG CTCACCTACA CCTTTACCCA GGTGTTGACC
CTGGCCCTGC TGGTATCGGC GCTGATCTTC AACAACAACT CCATCGACCA ACAGCAGCGG
GATGTGAAGC TCAACCTGGA AGACTCGGCG GCCCACCTAG GCAAGGCCAC CGAGAGCTTT
ATCGAGGGAC ATATCAGCGC CATAGACAAC GCGGCGCGCT GGCTGAGCCT TTCTAACTAT
GATGCGGCCC AGTGGCAGAG CCTGTTATCT AAATTGCACC AGAGCTACCC GTTTTTTATC
TCTATGCTGA TAGCCGATGA CAAGGGGCTT ATCTCGGCGG CCAGCCCCAT CTCACGCCTG
GGCAAGGAGA CAGTTCAAAA CAAAGATCTC AGCATCAGCG ACAGGCACTA TTTTCAGGAG
GCCTTCTACA ATCAGCTGAC CTTTATCTCC CCGGCCTTCC TCGGGCGGGG GTTTGGTACA
GATCCCATAG TCGCCATCAG CGCGCCGCTC TATTCCAAGG ACAACCCGGT CAGTCCCATA
GGGATCATCG AAGGCTCGTT AAACCTTACC AAGTTCGCCA GTATCGATGA GCGCAACCGC
GAGTTTCACG AGCAGGCCAT GGTGCTTACC GACGAGAACG GCCTGGTGAT CTACGCCTCT
GAGATGCTCG ACCTGGCACC ATTGACCCCG CTTAAGGTCT CCACCTCGGG GCAGCGCTAT
CGCACCAGCC TGAACATGAT CAACTTTCGC AATCTCGACA GCTTTAACCC TGAGTTCGCC
TACGCCAAAT ATGTGCTGAA AAATGGCTGG TCACTCTATG TGGTGATGCC CTTCTCGCCG
CTGGTGAAGC AGGTGGAGCA GCAGTACCTG ACCACCTTCA GCCTGCTGTT TATTGCCTTC
ATCATCACCA TCTTGCTGAT CAAGGTGATC AGTAATCGCC TGACTCAGCC GCTTGAGACC
ATCGCCAAGA AATTTAGCCA ATGGGGCATG GCCGAACATC AGGATGAGGC GATGGCAGAC
ACCACGCCCC AGGAGATCTA CGCCCTCTCC AGCAGCATTC AGAAGAGTAA ACAGGAGCTG
ATCAGCTACC AGCTGGAGCT GGAGGAAAAG GTGGCAATGC GCACGGTTGA GCTGGAAGAT
GCCAACCTCA AGCTGCAGGC GCTGGCGGAG CGCGATGAGC TGACTCAGCT CTACAACCGC
CGCTACGTGG AAAATCATTT CGGCAATATT CACGATATGT GCAAGCGCAG CTATGCGGCG
CTGGCGTTCT GCATCATAGA TATCGATCAC TTTAAGAAGA TCAACGACAC CTATGGCCAC
CAGATAGGCG ATAGCGCCCT GATCGCCCTG GCAGAACTGA TGAAGCAGTT CTTTAAGCGG
GACACGGATA TTGTCTCTCG CTATGGCGGT GAAGAGTTTT TGGTGGTGCT GCCCCAGTGC
AACGCCCTGC AGGTAGAGCA ACACCTGAAT CAGTTTAAGG AGCTGGTCGC CGAGCATCAG
ATAGAGGTGC CGGGCCAGGC AGCAATCAGC CTGACCGTGA GTATCGGCGC GGTGATCAGC
AATGCCGGCT ACATGAACGA CATAGATCAC TGGTTTAAGA TGGCCGACCT TAACCTCTAC
GAGGCCAAGG AAAATGGCCG CAACCGAGTG ATCTGCTCCC TGCTGTCAGC CGAAGATCAG
CTAAGCTAA
|
|---|
| Protein sequence | MINKNHLGFA LLLGLLGLLV NLAPIPLFGN QQLIIGNLFF VIVAIFLGPW YALLTSLLCA
TGLYIAWDSW HMFLLFPLEA LWLGYARRKE FYTLYADITF WLLLGMPLFY LYANLVFQMP
NSYMTFITLK QGINGMLYTA LGAICVTMLP SQLHIDGKLM NKKRKSFNAQ LTYTFTQVLT
LALLVSALIF NNNSIDQQQR DVKLNLEDSA AHLGKATESF IEGHISAIDN AARWLSLSNY
DAAQWQSLLS KLHQSYPFFI SMLIADDKGL ISAASPISRL GKETVQNKDL SISDRHYFQE
AFYNQLTFIS PAFLGRGFGT DPIVAISAPL YSKDNPVSPI GIIEGSLNLT KFASIDERNR
EFHEQAMVLT DENGLVIYAS EMLDLAPLTP LKVSTSGQRY RTSLNMINFR NLDSFNPEFA
YAKYVLKNGW SLYVVMPFSP LVKQVEQQYL TTFSLLFIAF IITILLIKVI SNRLTQPLET
IAKKFSQWGM AEHQDEAMAD TTPQEIYALS SSIQKSKQEL ISYQLELEEK VAMRTVELED
ANLKLQALAE RDELTQLYNR RYVENHFGNI HDMCKRSYAA LAFCIIDIDH FKKINDTYGH
QIGDSALIAL AELMKQFFKR DTDIVSRYGG EEFLVVLPQC NALQVEQHLN QFKELVAEHQ
IEVPGQAAIS LTVSIGAVIS NAGYMNDIDH WFKMADLNLY EAKENGRNRV ICSLLSAEDQ
LS
|
|---|
| |