| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1277 |
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| Symbol | |
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| ID | 4920418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1477688 |
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| End bp | 1479136 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162818 |
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| Product | putative signal transduction protein |
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| Protein accession | YP_001093406 |
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| Protein GI | 127512209 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1639] Predicted signal transduction protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.404354 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGTA AAGGTGCAGA ATACTGGACC AAACGCATCA GCGAACAGGA GATGCCGGCA
CTGAGCTCGA CGGTGAAAAC CCTAGAGAAA CTTGCCAAAG ATGATGTTTC CTCCCTGGCG
ATACTCGGCC GCAGCGTGAT GCATGACAAC GCGCTGACCT CGCGAATTCT TAAGGTGGCC
AATAGCGCCA TCTATAACAA GGGGATCTCC CACGTCACCA CTGTAAGCCG CGCGGCTGTG
GTACTGGGCT TTGATACCAT ACGCAACATC TGTATTACCG CCAAACTGCT CAGTAGCCTG
CTAGAAAACA AGGGCTTATC TGAGCCTGTG TATCACAGGC TGCTCACCCT GATGGCCAGA
GCCTTCCAGG CTGCCATGCT GGCCAAGATG ATGCTTAAAG ATCATGATGA AGAGCTGCAA
GAAGAGGTGT TTATTGCCGC GCTGCTCTAT CACCTGGGAG AGAGTGCCTT CTGGAGCATG
GGCGGTGAGA CCACAGAGCA GCTCGATGCG CGCCTTAATC AGGTCGATGA GAAGGATGCC
AACAATGTGG TTAGAGAGGT TCTGGGCACC TCTTTTACTC AGCTTTCCAT GGGCATAGCC
AAAAACTGGG GCCTAGGTGA GGTGTTGGTG AAGTCCCTGT CTAACCCGAA CGAGCGCACG
CCAGAGATCC GCTCCATCTA CCTTGCGAAC AAGATTAGCG AGTTGATGGC CAGCGACAGC
AAAGATATTG CCGAGCTGAA TCATCGAATC AAGCAGGCGG CAGACATGCT GGATCTCGAG
GTGGATGAGT TTAAGGGGCG GATGATTCAG TGCAGCCACG CCACGCGAAA GCTGGCCGAT
ACCTATGGCG CCAAGGTGCT GGTGGCCTTT TTGCCCGATA CTCACCAATT GACGCTGGCG
GCGGAGCCTG AGGCCGAGCC CATTAAGGTG CGTGAGTTTA ATGTCGACCT GCAGCTGAAG
AAATTAAGGG AACTTACAGA TTGTGCCATC AACAAGGCGA ACTTTAATGA GGTGATCACC
ATTACCCTGA GTGGGCTGCT CGATGGTATC GGCATGGATC GCTGCGCCGT GATGCTGCTC
TCACCAAACC GTAAACGCCT GCAACCTCGG GTGGTGTTAG GCGAGAACGG CGATAAGATG
AAGAATGAGT TTATCGTCGA GCTCAATCAC GATAAGAATG TGTTTGCCGA GAGTGTCGAT
CTCAAGAAAC CGCTGTTTAT CGACAACCCT AGCTCGGAAA AGTGGCGTCT CTATACCGAC
GAAGAACTCA GGCGCCACAC CTCTGTCATG GGCTTCATGC TGGCGCCGAT CTTGGTGGAT
AACAAGGTGA TTGGCCTGTT ATATGCCGAC AGGCACAGCT CAGAGCGTAA GCTGGCGGAA
GTGGATTTCG AGCGCTTTAC CCACTTCGCG CAGCTGACCA ATCTCTGTCT ATCTGTCTCT
GTGCATTAA
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| Protein sequence | MSGKGAEYWT KRISEQEMPA LSSTVKTLEK LAKDDVSSLA ILGRSVMHDN ALTSRILKVA
NSAIYNKGIS HVTTVSRAAV VLGFDTIRNI CITAKLLSSL LENKGLSEPV YHRLLTLMAR
AFQAAMLAKM MLKDHDEELQ EEVFIAALLY HLGESAFWSM GGETTEQLDA RLNQVDEKDA
NNVVREVLGT SFTQLSMGIA KNWGLGEVLV KSLSNPNERT PEIRSIYLAN KISELMASDS
KDIAELNHRI KQAADMLDLE VDEFKGRMIQ CSHATRKLAD TYGAKVLVAF LPDTHQLTLA
AEPEAEPIKV REFNVDLQLK KLRELTDCAI NKANFNEVIT ITLSGLLDGI GMDRCAVMLL
SPNRKRLQPR VVLGENGDKM KNEFIVELNH DKNVFAESVD LKKPLFIDNP SSEKWRLYTD
EELRRHTSVM GFMLAPILVD NKVIGLLYAD RHSSERKLAE VDFERFTHFA QLTNLCLSVS
VH
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