| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1234 |
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| Symbol | |
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| ID | 4922013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1432466 |
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| End bp | 1435780 |
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| Gene Length | 3315 bp |
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| Protein Length | 1104 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162774 |
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| Product | peptidase S41 |
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| Protein accession | YP_001093363 |
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| Protein GI | 127512166 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00254816 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCT CTCACCTGTT TGCCTGCTGC GCAATTGCAT TGGGCACCGC TTCTTCCGCA
CCACTTTTTG CCGCTCAAGC TGAAAATGTA AAAGCTGAAA GCCAGGCTAC TGAGCAGAAC
GTCGGCTACT ACCGCTCGCC TGCGATTCAT GGCGATACCC TGGTATTTAC CGCAGAAGGG
GATCTCTGGA TTCAGCAGTT AGGCGATGCC CAGGCGAGAA GGCTTACCAG CCTGCCAGCG
CAGGAGCTAG GCGCCGCCAT CTCAAACGAT GGCCAGCAGC TTGCCTTTGT CGCCAACTAT
GAAGGGGCGA GTGAGGTCTA TGTCATGCCC ATTCAGGGCG GCGTCGCCAA GCGAGTCAGT
TTCGAAAACA GCCGTGTGCG GGTGCAGGGC TGGACGCCAG ATGGCAAGGT GCTCTATGCC
ACGGATAATG CCTTTGGCCC CGCCAACTAT TGGGTGCTGC GCAGTGTCGA CCCTGAGAGT
TTGACCACGC AAGATCTGCC GCTGGCCGAT GCCATCGAAG GCGTGGTGGA TAACGCCGGT
GAATATGTCT ACTTTACCCG CTTCGGTCTG CAAGCCACCG GCGATAACGC CAAGGTGTAT
CGCGGCGGCG CCAAGGGAGA GCTGTGGCGC TATAAGCTTG GCAGTGACCA GGAGGCTCAG
CCTTTAACCG CCGAGCATGA CGGCTCGGTG CGCCAGCCCA TGCTGTGGCA GGACCGTCTC
TATTTCGTCA GTGATAGTAG CGGCAACGAT AATATCTGGT CCATGACCTT AGATGGCAAA
GACCTGCGTC AGCTTACTCA GTTTAGCGAC TGGCAGGTAC GCGGTGCTCG TCTCGAGCAG
GGACGCGTGG TGTTCCAGCA GGGCGCCGAT ATCAAGCTTT ATGATATCGC CAGCAATCAG
GTGTCTACCT TGGATATCCA CCTGACCTCA GATTTTCCTG AGCGCCGTGA GCACTGGGTC
AACAAGCCGA TGAAATATGC CACCTCCACC AGCCTGGCGC CCAATGGTGA CAAGGTGGTG
ATCACCGCCC GCAGCCATGT GGCACTGGCG GGTACAGATG GCTCGCGTTT GGTTGAGCTG
GGCCTGCCGG GAGACTACCG GGTTCGCGGC GCCGTGATGA GCCCCGATGG CAAGTGGGTC
TATGGGATCA GCGACGCCTC GGGCGAGCAG GAGATCTGGC GCTATAGCGC AGATGGCAGC
GATGAGGCCA AACAGCTCAC CCAAGATGGC AAGGCCCTGC GTATGGCGCT GAGCCTCTCT
CCCGATGGAC GCTACATTGC CCACGATGAT TACAACGGCG ACCTCTGGCT CTTGGATCTC
AAGAAGGGGC GCAACAGCAA GATATTGACC AATGGTCAGG GACTTGGCCC CTATGGCGAT
GTGGTCTGGT CGAACGACAG CCGTTTCATC GCCGTCACCA AGGATGAACG AGGTCAGCTA
AGACCACAGA TAGTGCTCTA CTCTCTGGAA GAGGAGAGAG CCGAGGCGCT GACCAGCGAC
AAGTATGAGT CTTTCTCGCC CGCCTTTAGC GATGATGGCC AGTGGCTCTA TTTCATCTCT
AATCGTGAGT TTAATGCCAC CCCAACCTCG CCTTGGGGCG ATCGCAACAT GGGACCGGTT
TTTGACAAGC GCGGGCAGAT CTTCGCGCTG GCGCTGACGC CAAAGGCGGT ATTCCCCTTC
AGCAAGCCAA ACGAGTTAAA TCAGCCTGCG GCCAAAGAGG AAGAAGCGGC TAAAAAGCCC
GCTAAGACCC AGGTTCAGTG GCAGGGGCTC AGCAAGCGCC TGTGGCAGGT GCCGGTCGCC
TCTGGTAATT ACAGCCAGCT ACAGGTGACC GAGAAGGGAC TTTACATGCT GGCTAATTCT
GTCGACCGCG CCCAGGCTCC AAATCTGATG TGGGTCAAGT TCGACCCCCT CGGCCCTAAG
GTGGAAACCT TCAGCGAAGA TGTCGCCAGC TATGCGCTCT CTGGCGATGA CAGCAAGCTC
TTCCTGCGTC GCCACAGTAA AGGCGGCGCG GAGATGCTGA TCGTCGATAC GGGCGAATCC
CTGCCCAAAG ATCTTGCCCA TGCCAAGGTA CAGACAGAGC AGTGGCAACT GGCGATCTCT
CCGCAGCTCG AGTGGCAGCA GATGTTTGAA GATGCCTGGC TGATGCACAG AGATTCCTTC
TTCGACAAGA AGATGCGCGG CCTCGACTGG CAGGCGACCA AGGCCAAGTA TCAGCCGTTG
CTGGCCAGAC TGACCGATCG TCACGAACTG AACGATATCT TCATGCAGAT GATGGGCGAG
CTCGATGCCT TGCACTCTCA GGTGCGCGGC GGCGATCTGC CACTAGATCC TAATCAGCCC
CAGGGCGCTA ACTTAGGTGC CCGCCTGTTA CAGACCAAGC AAGGGGTCCA GATAGCCCAT
ATCTATCAAA ACGATGCCGA GTTACCCCAG CAGGCTTCAC CGCTGGCGAG AGTCGATGTT
GATGCCAAGG TGGGCGACAT CATCCTGGCG ATCAACGGCA AACCGGTTGA AAACGTTGCC
GATGTGGCCC GCCACCTGCG CAATCAGGCG GACAAGCAGG TGCTGCTAAC TCTCAAGCGC
GATCGCAACA GCTTCAAGAC AATCGTGTTG CCGGTGGCTA ACCGCGCCGA TGCCAAACTG
AGATATCTGG ACTGGGTCAA CAACAATAAC CAGAAGGTGG CTAAGGCGGC CGATGGCGAG
ATAGGTTATC TGCATCTGTA TGCCATGGGC TCGGGCGATA TCGCCAACTT TGCCCGCGAA
TTCTACGCCA ACATAGAGAA GAAGGGCCTG ATTATCGATG TGCGCCGCAA CCGTGGCGGC
AATATCGACA GCTGGATCAT AGAGAAACTG CTGCGCCGCG CCTGGATGTT CTGGCAGCCA
ACTCAGGGGA CGCCGAACAC TAACATGCAG CAGACTTTCC GTGGTCATCT GGTGGTGCTG
ACCGATCAGC TGACTTATTC AGATGGCGAG ACTTTCTCTG CCGGCATCAA GGCACTAGGT
CTGGCCCCGC TCATCGGTAA GCAGACCGCC GGGGCCGGTG TCTGGCTCTC GGGTCGTAAC
TCGCTGACCG ACAAAGGGAT GGCGCGGGTT GCCGAGTATC CTCAGTACGC CATGGACGGA
CGCTGGATAG TGGAAGGCCG CGGCATTAGC CCAGATATCG AGGTCGATAA CCTGCCACAT
GCCACCTTTA AGGGCGAGGA TGCACAGCTG AACAAGGCGC TGAATTACCT CAAGCAGAAG
CTGGAGTTAG AGCCTGTGCT ACCCATTAAG GCGCAGCCTA TGCCAAGCAG CGGGATGGCT
CAAGACGTCA AATAA
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| Protein sequence | MKLSHLFACC AIALGTASSA PLFAAQAENV KAESQATEQN VGYYRSPAIH GDTLVFTAEG
DLWIQQLGDA QARRLTSLPA QELGAAISND GQQLAFVANY EGASEVYVMP IQGGVAKRVS
FENSRVRVQG WTPDGKVLYA TDNAFGPANY WVLRSVDPES LTTQDLPLAD AIEGVVDNAG
EYVYFTRFGL QATGDNAKVY RGGAKGELWR YKLGSDQEAQ PLTAEHDGSV RQPMLWQDRL
YFVSDSSGND NIWSMTLDGK DLRQLTQFSD WQVRGARLEQ GRVVFQQGAD IKLYDIASNQ
VSTLDIHLTS DFPERREHWV NKPMKYATST SLAPNGDKVV ITARSHVALA GTDGSRLVEL
GLPGDYRVRG AVMSPDGKWV YGISDASGEQ EIWRYSADGS DEAKQLTQDG KALRMALSLS
PDGRYIAHDD YNGDLWLLDL KKGRNSKILT NGQGLGPYGD VVWSNDSRFI AVTKDERGQL
RPQIVLYSLE EERAEALTSD KYESFSPAFS DDGQWLYFIS NREFNATPTS PWGDRNMGPV
FDKRGQIFAL ALTPKAVFPF SKPNELNQPA AKEEEAAKKP AKTQVQWQGL SKRLWQVPVA
SGNYSQLQVT EKGLYMLANS VDRAQAPNLM WVKFDPLGPK VETFSEDVAS YALSGDDSKL
FLRRHSKGGA EMLIVDTGES LPKDLAHAKV QTEQWQLAIS PQLEWQQMFE DAWLMHRDSF
FDKKMRGLDW QATKAKYQPL LARLTDRHEL NDIFMQMMGE LDALHSQVRG GDLPLDPNQP
QGANLGARLL QTKQGVQIAH IYQNDAELPQ QASPLARVDV DAKVGDIILA INGKPVENVA
DVARHLRNQA DKQVLLTLKR DRNSFKTIVL PVANRADAKL RYLDWVNNNN QKVAKAADGE
IGYLHLYAMG SGDIANFARE FYANIEKKGL IIDVRRNRGG NIDSWIIEKL LRRAWMFWQP
TQGTPNTNMQ QTFRGHLVVL TDQLTYSDGE TFSAGIKALG LAPLIGKQTA GAGVWLSGRN
SLTDKGMARV AEYPQYAMDG RWIVEGRGIS PDIEVDNLPH ATFKGEDAQL NKALNYLKQK
LELEPVLPIK AQPMPSSGMA QDVK
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