| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0937 |
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| Symbol | |
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| ID | 4920608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1076743 |
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| End bp | 1078833 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162469 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001093067 |
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| Protein GI | 127511870 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0901523 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC TAAGCTACCA GATAGGCGGA TGCGAATTAG ACTGCAAGTT AATGTCATTA
AAACACGCAG ACAGCAGCAT AAAACTCTCC TCCAAAGTCT TCGAACTCCT GATGCTCTTC
ATCGACAGTC CAGACAATGT CGTCTCGCGC CAACAGGCGA TCGACACCAT CTGGCTAGGC
AACGAAGGGG TCGGCAAGAA GGGCTTCACC AACGGCATCT GGGTACTGAG AAAAACCTTT
AAGGATCTGG GGGTCGAAGA GGAGGTGTTT AATACCCTGC CTAAACTCGG CTATCAACTC
ACCCTGACGG TGCAGCCCAT CGACAGCCAA ACAACCTCAG GCCCGACTCG CTCCTATACC
CGCTACGCAG CCTTTATCGC TATTTCACTC ATAACAGCTC TGCTCCTTTG GCTAACCTGG
AGCGAGGTTA CCGACGAGCA ACCCGTGCAG CTCAGCCAGC TACGGCCTGT CACAAACCCA
ACCAAGCTCA AGGTGACCAA CTATGGTGGG GTCGAAGAGC ATATCGCCGT GTCCCATGAT
GGCCAGCGAC TGGCCATGCA GTGGCGCGAC AACTCCCTGA GCGGCAAGAT CTATATCAAG
GAGCTGAGTC AGGTCGATGC ACCGCTGACC CTGATCTCCT TCGAGAACAA CGAAGAGGCC
TCCCCCGCCT GGTCACGCTC CGATGAAAAG CTGGCCTATG TGCGTCTCGA CCCGGCTGGT
GGCTGTCAGG TCAGGGTGAG AAACCTTTTG GATAACACCG ACCAACTCAT CGCCTCCGAC
TGTTTCTATA TCCCCTATAA GCGCATCGTC TCCTGGTCCG GGATCGATGA CAAACGCCTG
CTCTACGCCA AGAAGATGCA GGACCGCGTG GCCCTAATGG CCTACAACTT CGACACGGCT
GAGCATCAGC AGGTGAGTTT TCCCGATAAG AACGAGATAG ACTACGCCCC CAAATGGCTG
GACCAGGATA CCCAGCTGGC CTTCATTCGC GAGCGGGCGG CCTCCAACTT GCTCAGCCTG
ATCCTACAGA CGGCGGATGG CAGTGAGCTT GAGCTTATCC AAAACAGCCC CAGCATAGTC
GATTTCGACT ACTCGGCCCG CGAGCAGCTG TTTTACGTCA ACAATCTCGA CGGCGCGGCG
GCCATCATCT CCCGTATTCT TATGGACGGC AGCCAGCTGG CACCGCTGGC GCAATCTGGC
TTACCCAGCA GCATCAGCCT CTCTGACACA CAAGCCATGC TCTATGTGAC CGAACATATC
TCCAAGGAGT ACATCACCCA GCAGGCCTAC GGTGATGGCA AGCAGCTCAG GCGCATTTCC
TCCTCCTCCC GTGACATGTA TGGTAAGTAT GCCAATGCCA CTGGCGATAT CCTGTTTCTC
TCCAACCGCT CTGCCCTCTG GTCTATCTGG CGCAACAACA AGGTGAGCAG CAAGAACATC
ACCCACTCTC TCGGTAATGT CGGCGTGCCG GCTATCTCTC CCGTGAGCAG CGACTTTGCG
GTCAATATCA TCTCCGACAC GGGCCGCACC CTCTACATAG GCAACATAGA ATCTGAGAAC
TTTCGCGCCA TCGATATCCA GGGGATCGAG GCCGATAACT TGAGCTGGTC GGCGGATGGC
GAAGCCCTCT ACTTCAAGGG CTTCGCCAAG AAAAAAAACG GCATCTATAA GCTGAATGTC
AAATCTGGCG AGCTTGAAAA GATCCCCCAG CAGCAAGGTG TCTACGCCAT CGAGGGTCAG
GACGCCAACC ATCTCTATCT GTCCAAGTTC GATCAGAACG GCATCTGGCA TCTGGATCGC
ACCACGAACC AGATGACGCT GATCACCGAC AAGTTAGCCA AGTATGACTA CGGCGCCTTC
TATTATGAGC AGGGCTATCT CTATTTCTTG AGTCGCGATG CCGAGCGCGA CGCCATCATG
CGTATCTCTC TTGCCGACAA TGACCACAAG CCAGAGTTAG TGCAAAGTTT TGCCCCAGAT
GCGGTGCGCA AGTTTTTCGG CCTTGCGCCG GCGGATGGCC ACTCCTTCCT GGTCACCTTA
AAACTGGCCA ACGAGGCCGA TGTCTTCGGT TACAAGCTGG TGACAGAATA G
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| Protein sequence | MTKLSYQIGG CELDCKLMSL KHADSSIKLS SKVFELLMLF IDSPDNVVSR QQAIDTIWLG
NEGVGKKGFT NGIWVLRKTF KDLGVEEEVF NTLPKLGYQL TLTVQPIDSQ TTSGPTRSYT
RYAAFIAISL ITALLLWLTW SEVTDEQPVQ LSQLRPVTNP TKLKVTNYGG VEEHIAVSHD
GQRLAMQWRD NSLSGKIYIK ELSQVDAPLT LISFENNEEA SPAWSRSDEK LAYVRLDPAG
GCQVRVRNLL DNTDQLIASD CFYIPYKRIV SWSGIDDKRL LYAKKMQDRV ALMAYNFDTA
EHQQVSFPDK NEIDYAPKWL DQDTQLAFIR ERAASNLLSL ILQTADGSEL ELIQNSPSIV
DFDYSAREQL FYVNNLDGAA AIISRILMDG SQLAPLAQSG LPSSISLSDT QAMLYVTEHI
SKEYITQQAY GDGKQLRRIS SSSRDMYGKY ANATGDILFL SNRSALWSIW RNNKVSSKNI
THSLGNVGVP AISPVSSDFA VNIISDTGRT LYIGNIESEN FRAIDIQGIE ADNLSWSADG
EALYFKGFAK KKNGIYKLNV KSGELEKIPQ QQGVYAIEGQ DANHLYLSKF DQNGIWHLDR
TTNQMTLITD KLAKYDYGAF YYEQGYLYFL SRDAERDAIM RISLADNDHK PELVQSFAPD
AVRKFFGLAP ADGHSFLVTL KLANEADVFG YKLVTE
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