| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0844 |
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| Symbol | nrfA |
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| ID | 4923147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 967114 |
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| End bp | 968514 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640162377 |
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| Product | cytochrome c552 |
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| Protein accession | YP_001092975 |
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| Protein GI | 127511778 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000415815 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAGAA CATTAACTAC AAAAACCTTT GCACTGAGTG CTTTGGTCGC CGCTGGCCTG
ATGGCTACCG GCGTGATGGC AAGTGACAAG ACTGAGCCAC GTAACGAAGT CTACAAAGAC
AAGTTTTCTA AGCAGTACAA CAGCTGGCAT GACACAGCCG AAAGCAAAGA AGTTGTCGAT
ATGCTTGAAG AAGTTCCTAG CCTGGTTGTG TTGTGGGCAG GTTACGGCTT CGCAAAAGAT
TATAATGCAC CTCGTGGTCA TATGTATGCG GTAACCGACG TACGTAACAC ACTGCGTACC
GGTGCACCTA AGTCTGCCGA AGATGGCCCA ATGCCAATGG CATGTTGGTC ATGTAAGAGC
CCAGACGTGC CTCGCGTGAT CGAAGAGCAG GGCGAAGATG GCTACTTCAC TGGTAAGTGG
TACAAAGGTG GCGCAGAAAT CGTGAACACT ATCGGTTGTT CTGACTGTCA CGAGAAAGGC
TCTTCTAAAC TACGTATGTC TCGTCCATTC GCCGAGCGCG CCATGGCAAC ACTAGGCACG
CCATTTGACA AGGCTTCTAA GAAAGACAAG CAGTCTATGG TGTGTGGTCA GTGTCACGTA
GAGTACTACT TCGAGAAGAC CAAAGATCGC AAAGGTTTTG TTAAGTTCCC TTGGGATATG
GGCACAACTG TTGAGCAGAT GGAAGTCTAC TACGACAACA TGGAGTTCAA AGACTGGACT
CACGCCGTAT CTAAGACTCC TATGCTGAAA GCACAGCACC CTGGTTATGA AACTTGGCAG
CTAGGCGTAC ACGGTAAGAA CAACGTTACT TGTACCGACT GTCATATGCC TAAGGTGAAG
AATGCTGAAG GCCGTAAGTT TACCGACCAC AAGGTAGGTA ACCCATTCGA CCGCTTCGAA
GAGACTTGTG CGACTTGTCA TACTCAAAGC AAGGAGTTCA TGGTTAACCT GACGAAAGAG
CGCAAAGTTA AGGTTGCTGA CCTTAAGGCA CGTGCCGAGT CTCAGCTAGT TAAGGCGCAC
TTCGAAGCTA AAGCGGCTTG GGATGCGGGT GCAACTGAAG CTGAAATGAA GCCAATCTTA
ATGGATATCC GTCACGCTCA ATGGCGCTGG GACTATGCAA CTGCCTCTCA CGGTGTTGCG
GCTCACGCAG CTGACGAAGC GCTACGCATC CTAGGTACTG CGGTAGATAA GGCTGGTGAT
GCACGCATCA AACTAGCTCA ACTGCTAGCA ACCAAAGGTG TTAAGCAGCC TATCGCCTTC
CCAGATGTTT CTACCAAGGC CAAGGCGCAA GCTGCATTGG GTATGGACAT GAACAAGTTG
AATGCCGACA AGGCTGAGTT CAAGAAGACT GTACTGCCTA AGTGGGATGC AGAAGCTAAG
AAGCGCGAAG CAACTTACTA A
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| Protein sequence | MVRTLTTKTF ALSALVAAGL MATGVMASDK TEPRNEVYKD KFSKQYNSWH DTAESKEVVD
MLEEVPSLVV LWAGYGFAKD YNAPRGHMYA VTDVRNTLRT GAPKSAEDGP MPMACWSCKS
PDVPRVIEEQ GEDGYFTGKW YKGGAEIVNT IGCSDCHEKG SSKLRMSRPF AERAMATLGT
PFDKASKKDK QSMVCGQCHV EYYFEKTKDR KGFVKFPWDM GTTVEQMEVY YDNMEFKDWT
HAVSKTPMLK AQHPGYETWQ LGVHGKNNVT CTDCHMPKVK NAEGRKFTDH KVGNPFDRFE
ETCATCHTQS KEFMVNLTKE RKVKVADLKA RAESQLVKAH FEAKAAWDAG ATEAEMKPIL
MDIRHAQWRW DYATASHGVA AHAADEALRI LGTAVDKAGD ARIKLAQLLA TKGVKQPIAF
PDVSTKAKAQ AALGMDMNKL NADKAEFKKT VLPKWDAEAK KREATY
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