Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0721 |
Symbol | |
ID | 4921131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 821137 |
End bp | 822399 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640162254 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001092852 |
Protein GI | 127511655 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAAG ATACCAGCGC ACAAGATAAG CAAGTTGCCC CCAGCCTCGG ACGCCGCATC AAATGGCCTG TCACTATCGG CGCAGGCGTT CTCCTGGTTT CTGGTCTGGT GTGGGCCAGC GTCAGTGGCA GCAGCGTGAG CGAGTCTATC GACCGTAGCG AGCTGCGTTT TGCCACTCTG GAACGCGGCA CCTTAGTGCG TGATATCGCC TCTACCGGCA AGATAGTCGC CGCCAACGCC CCTATCCTCT ACGCCCCAGA GAAGGGCACG GTAACCTTAA TCGCCAACCC GGGTGACAAG GTGGAGCAGG GCCAGGTGGT TGCCACCATA GAGAGCCACA GCCTGACCAA CAACCTCAAG CAGCAGCAGG CGCTGCTGGA AGGGATGCAG AGCAGCCTTG AGCGTGCCCG TCTCGATGCC CGTCGTGATC AGCTTAAGGC GATACAGACC CTGGATATGG CCAAGGTGGA TCTCGAGGCG GCGGATCGCG AGAGTCGCCG TGGCGACCAG CTGATCGAGT CCAGCCTGAT CTCTAAGATA GATTATGAGA AGAGCAAGGA TGAGCTGCAC AAGGCCAAGC TGCTCTACGC TCACGCCCAG CAGGAAGCCG AGCTGATGAA AGATACCCTC AGCTTCGAGC TGAAGAACAA GGCCTCAGAG GTGGATCGTC AGGCCCTGGT GGTCGCCGAG CTTGAACGTC AGGTGGCGGC GCTGAACATC ACGGCCCCCG TCGGCGGCAT CATAGGTAAC TGGCTGACCG AGCAGAAGGC CCGTATCGGC CAGAGCCAGC CCATATTGAC CGTTGTGGAT CTCAGCGCCT TCGAGGCCGA GCTGGCGGTG CCAGAATCCT ACGCCGACGA GCTGGGGATT GGCATGGATG TCGAGCTTAA CTTCGGCGGC CAGCTGGTGA TGGGCAAACT GTCGGCCATC TCTCCCGAGG TGCGCAACCG TGAGGTGACT ACCCGAGTGC GCTTCGAGCA GCAAGCTGCC CTGCACCTGC GTCAGAACCA GCGTCTGTCG GCCCGCGTCT TACTGGAAAA TCGTCCCGAC GTGCTCATGG TCAAGCGTGG CCCCTTCGTC AACAGTGGCG GCGGCACCCT GGTCTATGCC GTCAAGAACG ACCTGGCCGA GCGCACCGAG ATCCAACTGG GTGCCCGCAG CATGAGCCAC ATAGAGGTGG TCTCGGGCGG TGAGGTCGGC GACCAGTGGA TTATCTCCTC CACCGACGCC TTTAAGAACG CCGAACAAGT ATTGATCCGC TAA
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Protein sequence | MIKDTSAQDK QVAPSLGRRI KWPVTIGAGV LLVSGLVWAS VSGSSVSESI DRSELRFATL ERGTLVRDIA STGKIVAANA PILYAPEKGT VTLIANPGDK VEQGQVVATI ESHSLTNNLK QQQALLEGMQ SSLERARLDA RRDQLKAIQT LDMAKVDLEA ADRESRRGDQ LIESSLISKI DYEKSKDELH KAKLLYAHAQ QEAELMKDTL SFELKNKASE VDRQALVVAE LERQVAALNI TAPVGGIIGN WLTEQKARIG QSQPILTVVD LSAFEAELAV PESYADELGI GMDVELNFGG QLVMGKLSAI SPEVRNREVT TRVRFEQQAA LHLRQNQRLS ARVLLENRPD VLMVKRGPFV NSGGGTLVYA VKNDLAERTE IQLGARSMSH IEVVSGGEVG DQWIISSTDA FKNAEQVLIR
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