| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0645 |
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| Symbol | |
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| ID | 4922979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 733888 |
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| End bp | 735198 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162178 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001092776 |
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| Protein GI | 127511579 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.379689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TGAAAATTAT CGCATTTTTT TGGATATGCC TACTGCTGCC CGCGTCCAGC
ATGGCACACA ACAATCGCCC CATGAAGCTC TATGTCGGTG CAGTCGAACT CTATAAGGCC
GCCAACGTCG AGCGTATCGT CGTGGGTAAC GGCAAGGTGC TCAGCGCCAA GGTCGTCGAT
AACAAGGGCG TCTTGCTGAT CGGCGAGGCT CCAGGCAATA CCGACCTGCA GCTATGGCAG
AAAGATGGCA AGCTGATCAA GCTCAGCCTC ACCGTCACCC CAGACAACAG CCTGCGCACC
ACCACCATGG TCAAGAAGAT GCTCGCCGCC TTCCCGTCGC TCACAGTCTC AGAGAGCGAT
GGCCTGATCA TAGTTCAGGG CGAAGCCGAC CTTGCCCAGA AAGAACAGCT GGAGAAGATC
CTCGAAGGCG ATCCTAACGT CGTCTCCCTG GTGAAATACC TCAAGTTTGC CAAGACAATG
TCACCCATGG TGAAGATGCA GGTCAAGATA GTCGAGTTTA ACAAGTCGAC CCTCAACAAC
GTCGGCATCA AGTGGGAAAC CTCCATGGCT GGTCCGGCCT ATGGTGTGGC CAAGGGCTTT
ACTGCCAACC CTATCTTCAA CGTCGCCTCA CCCGGCCAAT ACACAGAGGC GATCACCAAA
TCCATTACCG AGAACATAGG CGTCTTAGAT ACCCGTGGCT GGAGCTCGCT GGGTATCGTC
TCGGGTATCG GCAGCCAGAT CCAATTGCTA TCTGAAAAGG GCGATGCCCG CCTACTGGCC
CAGCCCAACC TGACCACCCG CAGCGGCGAG TCGGCCAGCT TCCTGGCCGG TGGCGAGTTC
CCTATCCGCA GCGTCAGCGG CCTGGGCGCC GTGGATGTCG AATATAAAGA GTACGGCATC
AAGCTGGACA TCGAGCCTGT GGTAGACGAG CAACAAAACA TCGTCAGCCG GGTCATGGCC
GAAGTCAGCT CAATCGATCC TTCTGTGGCC GTCGATGGTG TGCCAGGTAT GCTGACCCGC
CGCACCGAGT CGGTTATCAA CGTGAAGAAC AACGAGACCA TAGTGATCTC TGGCCTGGTC
AACAGTGAGA TGTCCAAGAT AGTCAACAAG TTCCCTCTGC TTGGCGATAT CCCCATCCTG
GGTGAACTCT TCAAGTCCCG CGACTTTAAA GACGACAAGA CAGAGTTGGT CATCTTCGTC
ACCCCTGTGG TGGTCTATCC CGGGCAGGAG GAGCATGACA CTCAACTCAA TCGCGGCCTG
GAGATGGCGG AAGAAGCCAC CAAGCTCGAA GCTTTCTATA TCTTGGACTA G
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| Protein sequence | MKTLKIIAFF WICLLLPASS MAHNNRPMKL YVGAVELYKA ANVERIVVGN GKVLSAKVVD
NKGVLLIGEA PGNTDLQLWQ KDGKLIKLSL TVTPDNSLRT TTMVKKMLAA FPSLTVSESD
GLIIVQGEAD LAQKEQLEKI LEGDPNVVSL VKYLKFAKTM SPMVKMQVKI VEFNKSTLNN
VGIKWETSMA GPAYGVAKGF TANPIFNVAS PGQYTEAITK SITENIGVLD TRGWSSLGIV
SGIGSQIQLL SEKGDARLLA QPNLTTRSGE SASFLAGGEF PIRSVSGLGA VDVEYKEYGI
KLDIEPVVDE QQNIVSRVMA EVSSIDPSVA VDGVPGMLTR RTESVINVKN NETIVISGLV
NSEMSKIVNK FPLLGDIPIL GELFKSRDFK DDKTELVIFV TPVVVYPGQE EHDTQLNRGL
EMAEEATKLE AFYILD
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