| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0468 |
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| Symbol | |
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| ID | 4922269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 525876 |
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| End bp | 526820 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640161997 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001092599 |
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| Protein GI | 127511402 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.530923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCG AAGATATTGC CCTGTTCCAC CGCATCGTCG AGACGGGCAG CCTGGTCGAG
GCTGCCGATA TTCTCAATGT GCCTAAATCG ACCCTGAGTC GGCGCCTGCA GACGCTGGAA
GATGAGCTCA ATGTTAAGCT GTTTCATCGC CAGAGTCGCG CCATGACCCT CACCGCCTCG
GGCAGCCATT TCTACAATAA AACCACGCCC TTGCTGGCGA CTCTGGAGCA GACCTTCTCC
GAGCTGTCGG GGAAGGAAGC GGCGGTTACC GGCCATCTAC GCATACTGAT CTTTCCGATC
CCTGAGCTCT TGTATATCAC TCAAGCGATA TTCGAGTTTA TGGATCTTAA TCCGGCGCTG
ACGGTGGAGA TCATCGTCAG CTCGGAGCCC AAGGATATGA TCCGCAATAA TATCGATCTG
GCCTTCATGC TCGAAGATGC GTTTAACGAG AATGAGATGG TGGCGCGGCA TATCATCAGC
GAATTCGTGC ATTTCTTTGC CAGCCCGGAA TACCTGGAGA GGGCGGGTAA ACCGACTAAG
CCGGAGGAGT TGCCCGAGCA TAACTCCATT TTGTTTCGCT ATCCCAACGG TAGGATCTTT
AATGAGGTGC CCTTCGGCAA AGACAGGATA CTGTCGGTAA CGGGTAACCT GTGTGTTAAC
AGCCTGAGTA CCTGTCTAGA GGCGGCCTTG ATGGGGCGTG GCATCGCCAT GATGCCGCTA
CCGATCGCCC GGGAATATGT GGAAAATGGC AAGCTGGTGA TGCTATTTGA AGATATCGAG
CCCTATGAGG GTAAGTGCTT CCTCGTCTAT CCGTCGCGGC GTTTCATTAG CCTCGCCAGC
CAGCGCTTTA TCGACCATGT GTTGCGGGCA CTAGATGAGT GTTTGCAAAA TGGTGCCTGC
GATCGTGAAG CCAGGACCAA GGGGGCGATT AAGCCGTTAA TTTAA
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| Protein sequence | MKTEDIALFH RIVETGSLVE AADILNVPKS TLSRRLQTLE DELNVKLFHR QSRAMTLTAS
GSHFYNKTTP LLATLEQTFS ELSGKEAAVT GHLRILIFPI PELLYITQAI FEFMDLNPAL
TVEIIVSSEP KDMIRNNIDL AFMLEDAFNE NEMVARHIIS EFVHFFASPE YLERAGKPTK
PEELPEHNSI LFRYPNGRIF NEVPFGKDRI LSVTGNLCVN SLSTCLEAAL MGRGIAMMPL
PIAREYVENG KLVMLFEDIE PYEGKCFLVY PSRRFISLAS QRFIDHVLRA LDECLQNGAC
DREARTKGAI KPLI
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