Gene Shew_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0417 
Symbol 
ID4921978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp471407 
End bp471754 
Gene Length348 bp 
Protein Length115 aa 
Translation table11 
GC content62% 
IMG OID640161946 
ProductArsR family transcriptional regulator 
Protein accessionYP_001092548 
Protein GI127511351 
COG category[K] Transcription 
COG ID[COG0640] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTAG CAATCTTTAA AGCCCTGTCC GATGAGACCC GTCTGCTGAG CCTGCTGCTG 
ATCCAGGCCG AGGGCGAGCT GTGTGTGTGC GAATTGATGG TGGCGCTGGA CGAGAGTCAG
CCCAAGGTCT CGCGTCATCT GGCGCAGCTA CGCAAGGCGG AACTGCTCAG CGATCGCCGC
CAGGGCCAGT GGGTGTTCTA CCGTATTAAC CCTGAGCTGC CCGACTGGGC GGGCGAGGTG
ATCCAAAAGA CGCTGGCGGG CAACCCTCAG CTGTTGAGTC AGGCCCAGGC CAGGTTGGCC
AAGATGGGTC AGCGCCCCGA GCGGGTGCAA GTCTGCTGTA AGGGATAA
 
Protein sequence
MAVAIFKALS DETRLLSLLL IQAEGELCVC ELMVALDESQ PKVSRHLAQL RKAELLSDRR 
QGQWVFYRIN PELPDWAGEV IQKTLAGNPQ LLSQAQARLA KMGQRPERVQ VCCKG